Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1204 ATGGAAACTTCAATTGTAAACTCCCACTTGTGCATCTGGTTGTTGCTAACTGTTGGGTTTGCAGAGCATGTGAGAAGTAGGAATGGCTGTTCACTTGCTGAAACAACCTGTGGATCCCTTCCTGTCCGGTTCCCTTTCCGAATAATAGGACGCCAACCAGAAGAGTGTGGGTATCCTGGGTTTGCTTTACAATGCTCCCCCTCTAGTCCTACTCTTCTTCGGCTCCCTCGCTCTGTCAAGCTCTATGTCAAAAATATTGACTACAGATCTCAAACCATTGATTTATATGATCCATCTCGCTGCCTTTCTAGGCAGCCATTGAACCTCAGTATCTCTGCTTCCCCTTTCCAATTCATACCCGAACCTTCTAATCTTGGTGAATATACCTTCTTCAATTGCTCATCAAAAAATACAGATCTCAACTTCAGAGTTCCATGTCTAAGCAGCTCTACCCATCAAGTACTTGCCATATGGTCTGGCAGAGACATCAAATCTGTTCCACATTCGTTTTGCACCAAAATAACTACCCCTTCATCTCTTCCGTATGAGTTTTCTGAGGAGGATTTCATTCTTCATTTGATGTGGTCTGACCCAATGTGTAAACATTGCGAATTAGAAAGAAAAAGATGTGGATTCAAGAATAATAGTACCAGTTATGAGACGGAATGTTTTGGAGATCACACAGGATCATCAACCAAATTAATCATTACAGGATCAATCTTAGGATCAATTCTCCTTTTGGTAGTGAATTATTACATTTACAACTCTTACAAATCACGGAAAGAAAACCAAGCAATAATTGTAAAGTTTTTGAAAGATTACGAGGCTCACAAACCCACCAGATATTCTTATGCTGAAATTAAGAGAATTACCAATCAATTTTCTGACAAATTAGGACAAGGGTCTTTTGGCACTGTATTTAAAGGAAAGATTTCATCCCAATTCAGGGCTGCTGTGAAAATTCTTGCTAATTCAGAAGGAAATGGGGAAGATTTTATTAATGAAGTTGGAACAATTGGCAGAATTCATCATGTTAACATTGTTCGCTTAATTGGCTTCTGTGCCGATAGCTTCAGAAGAGCTCTTGTTTATGAGTTCTTGCCAAATGGTTCATTACATAATTTTATAAATTCACCAGACAACAGGCAAAAATTCCTTGGTTGGGAAAAACTACAAGAAATTGCTTTAGGCATAGCTAAAGGAATTGAGTATCTTCATCAAGGTTCTTCAACAAAAGAAAGAGCAAGTGTGCCTAGATGA 1260 0.3881 METSIVNSHLCIWLLLTVGFAEHVRSRNGCSLAETTCGSLPVRFPFRIIGRQPEECGYPGFALQCSPSSPTLLRLPRSVKLYVKNIDYRSQTIDLYDPSRCLSRQPLNLSISASPFQFIPEPSNLGEYTFFNCSSKNTDLNFRVPCLSSSTHQVLAIWSGRDIKSVPHSFCTKITTPSSLPYEFSEEDFILHLMWSDPMCKHCELERKRCGFKNNSTSYETECFGDHTGSSTKLIITGSILGSILLLVVNYYIYNSYKSRKENQAIIVKFLKDYEAHKPTRYSYAEIKRITNQFSDKLGQGSFGTVFKGKISSQFRAAVKILANSEGNGEDFINEVGTIGRIHHVNIVRLIGFCADSFRRALVYEFLPNGSLHNFINSPDNRQKFLGWEKLQEIALGIAKGIEYLHQGSSTKERASVPR 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1204 419 Pfam Protein tyrosine and serine/threonine kinase 294 407 IPR001245 GO:0004672|GO:0006468
Dere04g1204 419 Pfam Wall-associated receptor kinase galacturonan-binding 32 97 IPR025287 GO:0030247
Dere04g1204 419 Gene3D Phosphorylase Kinase; domain 1 264 366 - -
Dere04g1204 419 FunFam serine/threonine-protein kinase PBS1-like 259 366 - -
Dere04g1204 419 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Dere04g1204 419 ProSiteProfiles Protein kinase domain profile. 292 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1204 419 SMART tyrkin_6 292 419 IPR020635 GO:0004713|GO:0006468
Dere04g1204 419 SUPERFAMILY Protein kinase-like (PK-like) 277 407 IPR011009 -
Dere04g1204 419 Gene3D Transferase(Phosphotransferase) domain 1 367 412 - -
Dere04g1204 419 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 276 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1204 Dere-ChrDere04 13471373 13473468 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1204 12 412 Receptor kinase-like Gene Family AT1G66910 29.707 3.44e-43 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Dere04g1204 PK_Tyr_Ser-Thr 9e-21 CL0016