Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1203 ATGGTAACCTACAGAACTTGCAGGGCAGCAGATGGTGAGCAGTGTCATAGTGTTTGTGGGAATCATAATGTTAGAAGCCCTTTCCGGCTAAAGGAATTTGCAGAGGAGTGTGGTGACCGGAGATACAACCTATCTTGCGAGCACAACCAACTGGTACTGTATTGGCAATCCGGAAGATACCATGTTCTGTCTATTAATTATGAGAATTACACCATCCGAGTGAGGGATGCCAATATTGGGGAGCTCAATTACTCTTCCCTGCCTCGGTATTCTTTAACGGACTTCAACATCCGCAATTGGTATTCTCCAGATGCATATACCATCAGTCAGGCACATAGTGATGTGATATTTTCCGAGGTAGGTCATGTGGATCGACTGACAAAGAGGATGATATTCGTTAGGTGTAAAGATGGAGCGAATTCCTCTCGATACGTTGACAGTACCCCTTGCACGAAAGCTTCAAATGGGTCGGCAACTTCTCCTTCGTCATCGTATCAGTACTGGAATTTTGGCAGCGAAACTCTAAGGGATTTGGGGTTGGAGGTGGGTTGTGGTATAGAGTTGATGTATATGACATCATGGCCTGCAGCTCTAAACCAAGACACCCACAACTATTCCTGCACGGACATCCACTCTATACTTCTTTATGGCTTTGAGCTTTCCTGGTTGAACAGTTTCTGCCACACCTCTGGATGTTTTGCCGGTCTCGGTCCACGTAAAAAGCCTCAGTGTATAGATTTGAGATTTGTAGTGACGCTTCTGCCTCTACATGTTGTTGCCAAATTTGTCATTGGAACTCCTTTCATCATTGTCCTTATAATCTATAAATGGCGACGAAGGCATTTATCAATGTATGACAACATTGAAGATTTTCTGCAAAGTGACAACAACATCATGCCTATAAGGTACTCATATAGAGACATCAAGAAAATGACTGAGGGGTTCAAAATGAAACTTGGGAAAGGAGGCTATGGCTCTGTGTTCAAAGGACAACTTCGAAGCCGTCGTCTTGTGGCCGTCAAGATGCTAGATAAGGCCAAAGCCAATGGTCAAGAATTCATCAACGAAGTTGCTACACTTGGGAGAATCCACCATATTAATACAAAACCTAGCGATCGTCCCTCAATGACAAAAGTTGTTGAAATGCTTGAGGGAGAAGAAGAAGACTTAGAAATGCCTCAAAAGCCTTACCTATACCCACAAGATTCCCAAGCAGCGGATATAAGAGATTATACTAATTCAACATGGCCATCCTCTGAGCCATCAATAAGTTATTCCAAAGAGTCAATCTCACTTTTGAATCAAGAGGAAGATCAATCAATGTAG 1326 0.4306 MVTYRTCRAADGEQCHSVCGNHNVRSPFRLKEFAEECGDRRYNLSCEHNQLVLYWQSGRYHVLSINYENYTIRVRDANIGELNYSSLPRYSLTDFNIRNWYSPDAYTISQAHSDVIFSEVGHVDRLTKRMIFVRCKDGANSSRYVDSTPCTKASNGSATSPSSSYQYWNFGSETLRDLGLEVGCGIELMYMTSWPAALNQDTHNYSCTDIHSILLYGFELSWLNSFCHTSGCFAGLGPRKKPQCIDLRFVVTLLPLHVVAKFVIGTPFIIVLIIYKWRRRHLSMYDNIEDFLQSDNNIMPIRYSYRDIKKMTEGFKMKLGKGGYGSVFKGQLRSRRLVAVKMLDKAKANGQEFINEVATLGRIHHINTKPSDRPSMTKVVEMLEGEEEDLEMPQKPYLYPQDSQAADIRDYTNSTWPSSEPSISYSKESISLLNQEEDQSM 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1203 441 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Dere04g1203 441 MobiDBLite consensus disorder prediction 399 441 - -
Dere04g1203 441 Pfam Wall-associated receptor kinase galacturonan-binding 15 76 IPR025287 GO:0030247
Dere04g1203 441 SUPERFAMILY Protein kinase-like (PK-like) 298 367 IPR011009 -
Dere04g1203 441 Pfam Protein tyrosine and serine/threonine kinase 316 367 IPR001245 GO:0004672|GO:0006468
Dere04g1203 441 ProSiteProfiles Protein kinase domain profile. 313 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1203 441 MobiDBLite consensus disorder prediction 406 441 - -
Dere04g1203 441 Gene3D Phosphorylase Kinase; domain 1 289 369 - -
Dere04g1203 441 PANTHER RUST RESISTANCE KINASE LR10-RELATED 285 367 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1203 Dere-ChrDere04 13464936 13471053 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1203 35 367 Receptor kinase-like Gene Family AT5G38260 26.611 2.61e-18 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Dere04g1203 GUB_WAK_bind 2.7e-15 No_clan