LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g1199	ATGACATGCCTGCTTACGTCAATAATTAAAGATATTTCCTTTGTGAATCGACAGTCCTGTCAGGTGTCAACGTCAGAGAAATTTCTTAGCAAATTCTTGATCATTCCACATATGTCATTTCGTATGTGGGTTTGCTATTTAATTTTGATTTCAATGGTCATGATAATAAACATGGGTTCCTCATCAGCACAGCTAGTGGTGGCCCTGTTTGTGATAATGGTAGCCTACAGAACTTGCAGGGCAGCAGATGGTGAGCAGTGTCATAGTGTATGTGGGAATCATAATGTTAGAAGCCCTTTTCGGCTAAAAGAATTTGTAGAGGAGTGTGGTGACCGGAGATACAACCTATCTTGCGAGCACAACCAACTGGTATTGTATTGGCAATCCGGAAGATACCATTTTCTGTCTATTAATTATGAGAATTACACAATCCGAGTGAGGGATGCCAATATTGGGGAGCTCAATTACTTTTCCCTACCTTGGTATTCTTTAACCTACTTCAACATCCGCAATTGGTATTCTGCAGATGCATACACCATCAGTAAGCCACCTAGTTTCACGTCATTTTTCGAGTTAGGTCATGTGGATCGACTGACAAAGAGGATGATATTCGTTAGGTGTAAAGATGGAGCGAATTCCTCTCGATACGTTGACAGAACCCCTTGCCCGAAAGTTTCAAATGGGTCGGCCGCTTCTTCTTCGTCATCGTATCAGTACTGGAATTTTGACAGCAAAACTCTAAGGGATTTGGGGTTGGAGTGGGTTGTGCTTTCCTGGTTGAACAGTTTCTGCCACACCTCTGGATATTCTGCATATCTCGGTCCAAGTAAAAAGCCTCGGTGTACGGGTGTGGGATTTGTAGATATGCTTGTGGCTCTACATGTTGTTGTCAAATTCGTCATCGGACCTCCTTTCATCATTGTCCTTTTAATCTATAAATGGCGACGAAGGCATTTATCAATGTATGGCAACATTGAAGAATTTCTGCAAAGTGACAACAATATCATGCCTATAAGGTACTCATATAGAGACATCAAGAAGATGACTGAGGGGTTCAAAATGAAACTTGGGAAAGGAGGCTATGGCTCTGTGTTCAAAGGACAACTTCGAAGTCATCGTCTTGTGGCCATCAAGATGCTGGATAAGGCCAAAGCCAATGGTAAAGAATTCATCAACGAAGTTGCTACTCTTGGGAGAATCCACCATATTAATACAAAACCTAGCGATCGTCCCTCAATGACAAAAGTTGTTGAAGTGCTTGAGGGAGAAGAAGAAAACTTAGAAATGCCTCAAAAGCCTTACCTATATCCACAAGATTCACTGGCACTGGATATTAGAGATTATACTGGTTCGACATGGCCATCCTCTGAGCCATCAATAAGTTATTCCAAGGAGTCAATCTCACTTTTAAATCAAGAGGAAGATCAATAA	1431	0.4151	MTCLLTSIIKDISFVNRQSCQVSTSEKFLSKFLIIPHMSFRMWVCYLILISMVMIINMGSSSAQLVVALFVIMVAYRTCRAADGEQCHSVCGNHNVRSPFRLKEFVEECGDRRYNLSCEHNQLVLYWQSGRYHFLSINYENYTIRVRDANIGELNYFSLPWYSLTYFNIRNWYSADAYTISKPPSFTSFFELGHVDRLTKRMIFVRCKDGANSSRYVDRTPCPKVSNGSAASSSSSYQYWNFDSKTLRDLGLEWVVLSWLNSFCHTSGYSAYLGPSKKPRCTGVGFVDMLVALHVVVKFVIGPPFIIVLLIYKWRRRHLSMYGNIEEFLQSDNNIMPIRYSYRDIKKMTEGFKMKLGKGGYGSVFKGQLRSHRLVAIKMLDKAKANGKEFINEVATLGRIHHINTKPSDRPSMTKVVEVLEGEEENLEMPQKPYLYPQDSLALDIRDYTGSTWPSSEPSISYSKESISLLNQEEDQ	476

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g1199	476	SUPERFAMILY	Protein kinase-like (PK-like)	335	404	IPR011009	-
	Dere04g1199	476	Pfam	Wall-associated receptor kinase galacturonan-binding	87	148	IPR025287	GO:0030247
	Dere04g1199	476	MobiDBLite	consensus disorder prediction	451	476	-	-
	Dere04g1199	476	Pfam	Protein tyrosine and serine/threonine kinase	353	404	IPR001245	GO:0004672\|GO:0006468
	Dere04g1199	476	ProSitePatterns	Protein kinases ATP-binding region signature.	356	378	IPR017441	GO:0005524
	Dere04g1199	476	Gene3D	Phosphorylase Kinase; domain 1	326	406	-	-
	Dere04g1199	476	MobiDBLite	consensus disorder prediction	451	469	-	-
	Dere04g1199	476	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	321	404	IPR045874	GO:0004672

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g1199	Dere-ChrDere04	13397286	13402218	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g1199	107	404	Receptor kinase-like Gene Family	AT5G38260	25.904	1.69e-16	80.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Dere04g1199		GUB_WAK_bind	2.7e-13	No_clan