Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1198 ATGGAAACTTCAATGGTGAACTCCTACTTGTGCATATGGTTGTTGCTAATTGTTGGGTATGCAGAGCATGTGGGAAGCTGGAAGAGCTGTCCACTTCCTGAAACGAGCTGTGGATCCCTTCCTGTCCGATTCCCTTTCCGGATAATAGGACGCCAACCAGAAGAGTGTGGGTATCCTGGGTTTGCTTTAGAGTGCTCCCCCTCTAATCTTACTCTTCTTGAGCTCCCTCGCTCTGTCAAGATCTATATTAAAAGTATTGATTATAGATCCCAAACCATTGATTTATACGATCCATCTCGCTGCCTTTCTAAGCAGCTTGAGAATCTCAGTATCTCTGCCTCCCCTTTCCAGTTCATAGAGACCTATCTTTATGACTACACCTTTTTCAATTGCTCATCCCAAAAAGACAGACCGTTAAACGAAGTTCCATGTCTGAGCAGCTCTATTCATAAAGTATATGCCATTTCAAATGATAGTGAAATCAGATATTACCCCTTGACATTTTGCAGCAAAATATTCACCATTACATCCCTCCCGTCTAATTTGTTTTATGAGGATATCACTCTTCATTTGATGTGGCCTCTTCCAATGTGTAGAGATTGCGAAACAAAAGGAAAAAGATGTGGATTCAAGAACAGTACTACCAATTATGAAACTGCATGTTTCGAGGATCGTCACGAAGTACTTCATATGATAAGTGTTATGATAGCTGACCCAATCATGTCAATATCTTTTGCAGGTTCATCAACCAAATTACTCCTTACAGGATCAATCCTAGGCTCACTTCTCCTTCTAGTAGTGACTATTGCTACAATATATTACATCTGCAGCTCTCAGAAATCACGAAAAGAAAACCAAGCAATAATCGAAAAGTTTTTGAAAGATTATAAGGCCTTCAAGCCCACCAGATATTCTTATGCTGAAATCAAAAGAATTACCAATCAATTTTCTGACAAGTTAGGACAAGGGTCTTTTGGTACTGTGTTCAAAGGAAAGATTTCAACCCAATTCATAGTTGCTGTGAAAATTCTTGCTAATTCTGAAGGAAATGGGGAAGAGTTCATCAATGAAGTCAGAACAATTGGCAAAATCCATCATGTTAACATTGTTCGCCTGATTGGCTTCTGTGCCGATGGCTTTAGAAGAGCTCTTGTTTACGAGTTCTTACCAAATGGTTGA 1179 0.3961 METSMVNSYLCIWLLLIVGYAEHVGSWKSCPLPETSCGSLPVRFPFRIIGRQPEECGYPGFALECSPSNLTLLELPRSVKIYIKSIDYRSQTIDLYDPSRCLSKQLENLSISASPFQFIETYLYDYTFFNCSSQKDRPLNEVPCLSSSIHKVYAISNDSEIRYYPLTFCSKIFTITSLPSNLFYEDITLHLMWPLPMCRDCETKGKRCGFKNSTTNYETACFEDRHEVLHMISVMIADPIMSISFAGSSTKLLLTGSILGSLLLLVVTIATIYYICSSQKSRKENQAIIEKFLKDYKAFKPTRYSYAEIKRITNQFSDKLGQGSFGTVFKGKISTQFIVAVKILANSEGNGEEFINEVRTIGKIHHVNIVRLIGFCADGFRRALVYEFLPNG 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1198 392 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 286 IPR046948 -
Dere04g1198 392 Gene3D Phosphorylase Kinase; domain 1 288 388 - -
Dere04g1198 392 ProSiteProfiles Protein kinase domain profile. 314 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1198 392 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Dere04g1198 392 Pfam Protein tyrosine and serine/threonine kinase 316 392 IPR001245 GO:0004672|GO:0006468
Dere04g1198 392 Pfam Wall-associated receptor kinase galacturonan-binding 34 97 IPR025287 GO:0030247
Dere04g1198 392 FunFam serine/threonine-protein kinase PBS1-like 280 388 - -
Dere04g1198 392 SUPERFAMILY Protein kinase-like (PK-like) 300 392 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1198 Dere-ChrDere04 13385229 13388308 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1198 8 392 Receptor kinase-like Gene Family AT5G38260 28.125 1.34e-31 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Dere04g1198 PK_Tyr_Ser-Thr 2.5e-13 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1198 04 13385229 13388308 Dere04g1198 04 13385229 13388308 ECH