LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g1179	ATGCCTTCGGAGTTTCCCAGAAGGTGTGGAACTGAGAAATTGTTTATGACGATTGTGATATTCAACCATGTCATCCTCGTAATGATCTCGTCCATGAGGTCAGTGTCCTGGAAAATTAGTGCTGATGTGGCTGATAGTTGGGAAGACCTTGATGTTTCTGTAGTATCTCGTGGCGCTTTAAGGGTGGCTGTTGGATGGCATCTTTCACACGTGGGCAGTTGTTACTGGACATGGGAAGTTTTTAATTTTCTCCATCCTGACGACATGGGAGACTGGGGGGAAAGCAACCTTGTAAATGAGCTATTACAGGGTAGGGAGCTTGCAAGACACCTCCAAATGTGCATGAAGGTGCCTTCGACATCCCAAGAAACGCGTGAGATGTTGATCCAGAGCATCATTGCCACATTTGAAAAGGCACTTGCTCTGGTAAACTGGACTGGTGGATCGGTGAGAGTGGGTGAAGCTTCCAATTTCAAGCAGCCCACGGGTGTTATGCTGGAGTCACCACCTTTCAGTCCTCGCAGTGAAGACTCTGACAAGGATCTGCGAGACCACGACCAGAATGCATCCAGAAAGAGAAACGCATTGGCAAGATGGACCAAACAGATCAGAGTTGGCCCAGGGATGGGAGTAGAATCGCTTCTCGACGATGGCTTCAGTTGGAGAAAATATGGCCAGAAAGACATTCTTGGAGCCAAATTCCCGAGAGGCTACTACAGATGCACACATAGAAACGTGCAAGGATGCTTGGCCACAAAGCAAGTGCAGAGATGCGACGAAGACCCCACAATCATCGAAGTGACTTACAAAGGAAACCACACCTGCACAGTGGCCTCCAACGTTTCTGCTGCATCATCGCATCAGCAGCAATCACAGGAGCAACTTGCGAACCTGCGGGCAGGCCTGAGAGTGTTGACAGACAATCTAGATGCCTCAGACCAAGCCTCTTTTGCTTCGTTCCTATTGCCTTCTACTGCCCATTCTATGATACCCCAAGAACAAGAAGTCTTGTGTCCTATTATTGAAACCTTTAATTCTCCTCCCCAGTTGTCCCCTGCCACCTCTGCAACGACCCACTTTACAGTGTCTCCGGGAGGGATCAATGCCTTTGGTGGCCACCACAATTTGGCTTCTTCTACCTCTGACATGAACCACGTCGTCTCTGCACCGAACTCTCCCACCGTTGGCTTGGAGTTCCCATTTGATCAGTTCCGATTGGACGGCCACAACTTCACATTTGATAACTCACGATACTTCTAA	1260	0.4889	MPSEFPRRCGTEKLFMTIVIFNHVILVMISSMRSVSWKISADVADSWEDLDVSVVSRGALRVAVGWHLSHVGSCYWTWEVFNFLHPDDMGDWGESNLVNELLQGRELARHLQMCMKVPSTSQETREMLIQSIIATFEKALALVNWTGGSVRVGEASNFKQPTGVMLESPPFSPRSEDSDKDLRDHDQNASRKRNALARWTKQIRVGPGMGVESLLDDGFSWRKYGQKDILGAKFPRGYYRCTHRNVQGCLATKQVQRCDEDPTIIEVTYKGNHTCTVASNVSAASSHQQQSQEQLANLRAGLRVLTDNLDASDQASFASFLLPSTAHSMIPQEQEVLCPIIETFNSPPQLSPATSATTHFTVSPGGINAFGGHHNLASSTSDMNHVVSAPNSPTVGLEFPFDQFRLDGHNFTFDNSRYF	419

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g1179	419	MobiDBLite	consensus disorder prediction	161	194	-	-
	Dere04g1179	419	SMART	WRKY_cls	215	277	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1179	419	ProSiteProfiles	WRKY domain profile.	210	278	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1179	419	Pfam	WRKY DNA -binding domain	216	275	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1179	419	SUPERFAMILY	WRKY DNA-binding domain	214	277	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1179	419	FunFam	WRKY transcription factor 53	201	278	-	-
	Dere04g1179	419	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	91	294	IPR044810	GO:0003700
	Dere04g1179	419	MobiDBLite	consensus disorder prediction	173	192	-	-
	Dere04g1179	419	Gene3D	WRKY domain	209	278	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g1179	Dere-ChrDere04	13163377	13168387	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g1179	90	281	WRKY Transcription Factor Family	AT5G24110	43.299	4.14e-50	170

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Dere04g1179		WRKY	5.4e-27	CL0274