Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1178 ATGGATGACAGCTTTCCTAATATTCTTGAAGACAAGGAATTTGGTGGAGATGACCTCTTCGCCATCTTGGAGAGCCTCGAGGACTTCTCCGACTTTCCTCCCATTGACGAAGCTGTTGTTAGCACGAAGGAGAACGAGGAAACGTCAAGGTTGGTGTCCCAAAAATCAACCTCTTCAAGTGCTCTACAAGAGTCTGAAGAAGCTGAGTTAGACGCTTCACCTCAAAGTAAGAGACAGAAGCTCGCATCCACCACTTCGTCGGAGGAACCAAACCCAGATGGCCAACAAAGGATATCTCATCTTACTGTCGAGCGCAACCGAAGAAAGCAAATGAACGAGCACTTGTCGGTATTGAGGTCACTTATGCCTAACTTTTATGTCAAACGAGGAGACCAAGCGTCGATAATTGGAGGAGTAGTTGATTACATTAACGAGTTGCAGCAGGTTCTACAGTCCCTCGAAGCCAAGAAGCAAAGAAAAGTATACAGTGAAGTGCTAAGCCCTAGGCTAGTCTCAAGTCCAAGGCCTTCAGCACTTAGTCCTAGAAAACCACCTGTGAGCCCTAGGCTAAGCTTGCCCATCAGTCCCAGGACTCCCCAACCAGGTAGCCCTTACAAGCCCAGGTTGCAGCAAGGTTACCTCTCACCTACCATCTCCAACTCTCTCGAACCGTCTCCTACCTCTTCTGCTGTATCTTCCTCCATTAACGATAACATGAATGAGCTTGTGGCCAATTCCAAGTCTGCTATGGCCGATGTGGAGGTCAAGTTTTCTGGGCCACACGTTCTTTTGAAAACTGTGTCTCCGCGAATTCCGGGGCAAGTTTTGAAGATCATATCAGCACTTGAAGACCTAGCGCTCGAAATCCTCCGTGTCAGCATCAGCGCTTCTGATGAAACCATGCTAAACTCATTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCGGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGCCAAGTTTACTAA 999 0.4725 MDDSFPNILEDKEFGGDDLFAILESLEDFSDFPPIDEAVVSTKENEETSRLVSQKSTSSSALQESEEAELDASPQSKRQKLASTTSSEEPNPDGQQRISHLTVERNRRKQMNEHLSVLRSLMPNFYVKRGDQASIIGGVVDYINELQQVLQSLEAKKQRKVYSEVLSPRLVSSPRPSALSPRKPPVSPRLSLPISPRTPQPGSPYKPRLQQGYLSPTISNSLEPSPTSSAVSSSINDNMNELVANSKSAMADVEVKFSGPHVLLKTVSPRIPGQVLKIISALEDLALEILRVSISASDETMLNSFTIKIGIECQLSAEELAQQIQQTFCQVY 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1178 332 MobiDBLite consensus disorder prediction 51 66 - -
Dere04g1178 332 Gene3D - 87 160 IPR036638 GO:0046983
Dere04g1178 332 Pfam Helix-loop-helix DNA-binding domain 96 147 IPR011598 GO:0046983
Dere04g1178 332 MobiDBLite consensus disorder prediction 169 210 - -
Dere04g1178 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 146 IPR011598 GO:0046983
Dere04g1178 332 FunFam Transcription factor SPEECHLESS 87 161 - -
Dere04g1178 332 MobiDBLite consensus disorder prediction 178 203 - -
Dere04g1178 332 SMART finulus 101 152 IPR011598 GO:0046983
Dere04g1178 332 Coils Coil 139 159 - -
Dere04g1178 332 MobiDBLite consensus disorder prediction 41 98 - -
Dere04g1178 332 MobiDBLite consensus disorder prediction 76 98 - -
Dere04g1178 332 PANTHER TRANSCRIPTION FACTOR FAMA 15 328 IPR044283 GO:0003700|GO:0010052
Dere04g1178 332 MobiDBLite consensus disorder prediction 215 234 - -
Dere04g1178 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 168 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1178 Dere-ChrDere04 13158052 13160416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1178 1 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 51.821 3.22e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere04g1178 HLH 1.3e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1178 04 13158052 13160416 Dere04g1178 04 13158052 13160416 ECH