LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g1174	ATGGCGTTAGCCGTGTTAGACGCGCTGGACTCGGCTCGTACGCAATGGTACCACCTGACAGCCATTGTGATCGCAGGCATGGGCTTCTTCACCGATGCCTACGACCTCTTCTGCATCTCAACGGTTTCGAAACTGCTAGGCCGCTTGTACTACTTCGACCCCACGTCCCCCAAACCTGGCAAACTCCCTCACAAAGTTAACAACCTGGTCGTGGGCACGGCCATCGTCGGAACCCTTTCGGGCCAGCTAGTGTTCGGGTGGCTCGGAGACAAGCTTGGGCGCAAGAAAGTCTATGGCGTCACTCTAATTCTGATGGCTGCATGCGCCATATGCTCGGGCCTATCCTTAGGTTCTACAGCCAAGTCTGTGATGACAACCCTCTGCTTCTTCAGGTTCTGGCTGGGCTTTGGGATCGGTGGAGACTACCCTCTCTCCGCGACCATCATGTCGGAATACGCTAACAAAAGGACTCGCGGAGCTTTCATCGCAGCTGTTTTTGCTATGCAAGGCGTCGGAATTATATTCGGCGGCGTGGTGGCTATGATTTTCTCTAAGCTTTTCTTAGCAAGCAACCCTGCCCCCACGTATAAACAAGACCCAGTCTTGTCGACCCAACCCGAGGGTGACTTCCTGTGGCGAATAGTGCTTATGGTGGGAGCCATTCCGGCGTTGTTGACGTTCTACTGGCGAATGAAGATGCCCGAAACGGGGCGTTACACGGCTTTGATCGAAGGGAATGCGAAGCAAGCGGCTGCTGACATGGCCAGGGTTTTGGACATCGAAATCCAAGCTGAGCAAGAGAAGTTGGCTCAGTTCAAATCCGCCAACGAGTACTCGCTGTGGTCCAACGAGTTTTTTGAGAAACACGGGCGTCATTTGATTGGTACCATGAGCACTTGGTTCTTGTTGGACATTGCGTTTTACAGTCAGAACTTAACCCAGAAGGATATTTTCCCAGTGATGGGGTTAATAGACCTGGAGCCCGACATGAATGCTCTGGATGAGGTGTTCCAGACGTCACGTGCCATGTTCGTGATCGCCTTGCTGGGGACGTTCCCGGGTTATTGGTTCACCGTGTTTTTCATTGAAAAGCTCGGGCGTTTCAAGATCCAACTCATTGGATTCTTCATGATGTCGTTCTTCATGTTCGTGATAGGTGTGAAATATGATGACCTCAAGTACAACGCCCACATGTTTGCTTTGTTATATGGGCTAACGTTTTTCTTCGCGAACTTCGGACCCAACAGCACGACGTTTGTGCTGCCGGCGGAGCTGTTTCCGACAAGGGTGAGGTCGACGTGCCACGCGCTGAGTGCGGCAGCAGGGAAAGCAGGTGCGTTGGTGGGGGTGTTTGGAATCCAGAATTACACTCAGGATGGGAACCCGAAGCAGATAAAGATGGCTATGAAGATATTGGCGGTGACCAATTTTATAGGGTTTTGCTGTACATTCTTGGTAACGGAAACGAAAGGGCGGTCTCTGGAGGAAATATCAGGGGAGGACGGAAAAGATGCAGAGCTCACTCCAACACCGATGGCTAGGGGACGCGCTGAGTCAATGTGA	1563	0.5208	MALAVLDALDSARTQWYHLTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYFDPTSPKPGKLPHKVNNLVVGTAIVGTLSGQLVFGWLGDKLGRKKVYGVTLILMAACAICSGLSLGSTAKSVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGVGIIFGGVVAMIFSKLFLASNPAPTYKQDPVLSTQPEGDFLWRIVLMVGAIPALLTFYWRMKMPETGRYTALIEGNAKQAAADMARVLDIEIQAEQEKLAQFKSANEYSLWSNEFFEKHGRHLIGTMSTWFLLDIAFYSQNLTQKDIFPVMGLIDLEPDMNALDEVFQTSRAMFVIALLGTFPGYWFTVFFIEKLGRFKIQLIGFFMMSFFMFVIGVKYDDLKYNAHMFALLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGALVGVFGIQNYTQDGNPKQIKMAMKILAVTNFIGFCCTFLVTETKGRSLEEISGEDGKDAELTPTPMARGRAESM	520

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g1174	520	SUPERFAMILY	MFS general substrate transporter	9	498	IPR036259	-
	Dere04g1174	520	ProSiteProfiles	Major facilitator superfamily (MFS) profile.	21	491	IPR020846	GO:0022857
	Dere04g1174	520	FunFam	Inorganic phosphate transporter 1-6	17	509	-	-
	Dere04g1174	520	Pfam	Sugar (and other) transporter	22	498	IPR005828	GO:0016020\|GO:0022857\|GO:0055085
	Dere04g1174	520	PANTHER	SOLUTE CARRIER FAMILY 22 MEMBER	16	495	-	-
	Dere04g1174	520	NCBIfam	phosphate:H+ symporter	6	500	IPR004738	GO:0005315\|GO:0006817\|GO:0016020
	Dere04g1174	520	CDD	MFS_PhT	22	490	-	-
	Dere04g1174	520	Gene3D	MFS general substrate transporter like domains	18	512	IPR036259	-
	Dere04g1174	520	MobiDBLite	consensus disorder prediction	496	520	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g1174	Dere-ChrDere04	13123568	13125130	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g1174	3	504	Inorganic Solute Cotransporters	AT5G43360	63.107	0.0	649