Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1173 ATGGAACAGAGCATCCTATGCAAATACACGGTACATCACAGCGTTACCAAGAAGTTCGCGAAGCCTAAGGTCTTGGATGTCCAGAATCCGATAGAGCCTCGAGTGGTACGGATATCGGTGACCGATCCAGATGCTACAGACTCCTCCAGCGATGAAGAAGGAGAGTATGTAAGTCGTCCCAGAGTGAGGCGATATGTGAGCCAGATTGACATCGAAACAAACGCGAAAAGTGTGACTCTCCCCAGCAATGCCCGGAAGAGGCCAGCCGGAGACACCACGACTTGCCCGCGGCCAGTGAAGATTTCCACAACGTGCAACGGCAGAAAGTTCCGAGGTGTACGGCAAAGACCGTGGGGAAAATGGGCGGCAGAGATTCGAGATCCCGCAAGACGCGTACGGCTCTGGCTGGGTACGTACGACACAGCAGAGGAGGCAGCCATGGTGTACGATAATGCGGCTATTAAGCTGCGAGGTCCCGACGCTCTAACAAACTTCGTAACGCCACCGCCGAGGGAAAAGGCGGAAGAAGTGGAAGTAGAAGTGACAGTGAAACCGGAAATGAAAGTTTCAGTGAAGTCAGAAGCCTCCGCTTCGGGCTACGATTCCGGGGAAGAATCTCGTAATCTTTCATCACCCACATCGGTGCTTCATTTCAGAAGCAATTCGAGTGAGGAAACAGAGCCTCAAAAGGCGATTGAGGCGGAAGAGGAGCGTGAGTGTGATACAGAGGCGGGATCGGAAGAAGGAGCGGTTGCAGGGGCAGAGGTATTTGGGGAGTGCGAGGGAGAAACGAGTCGAACGAGCTTGTGGGAGGAGAAGGAGGAGGAGGAGTATTGGAGGATTGACCTGCCAGCGTGGGATGACGTGTTGTGGAATTTTCCAACGCCGGAGTACTCTTCGGTGTTGTACGAAGAACCGTCGGAGTTGTTCGGCGAAACGATGACGGTTTTCGCGGATCAAGGAGTACTAGAAGGGGAACGGGAGTTAGATTTGGAGAGAATGTACTCGCCATCAAGGACGTGCCAAGTGGACGATTACTTCCAAGACATATTATTAGGGTCAGACCCTCTAGTGGTGCTCTGA 1083 0.53 MEQSILCKYTVHHSVTKKFAKPKVLDVQNPIEPRVVRISVTDPDATDSSSDEEGEYVSRPRVRRYVSQIDIETNAKSVTLPSNARKRPAGDTTTCPRPVKISTTCNGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFVTPPPREKAEEVEVEVTVKPEMKVSVKSEASASGYDSGEESRNLSSPTSVLHFRSNSSEETEPQKAIEAEEERECDTEAGSEEGAVAGAEVFGECEGETSRTSLWEEKEEEEYWRIDLPAWDDVLWNFPTPEYSSVLYEEPSELFGETMTVFADQGVLEGERELDLERMYSPSRTCQVDDYFQDILLGSDPLVVL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1173 360 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 251 - -
Dere04g1173 360 MobiDBLite consensus disorder prediction 195 222 - -
Dere04g1173 360 MobiDBLite consensus disorder prediction 191 252 - -
Dere04g1173 360 SUPERFAMILY DNA-binding domain 109 166 IPR016177 GO:0003677
Dere04g1173 360 Gene3D AP2/ERF domain 108 167 IPR036955 GO:0003700|GO:0006355
Dere04g1173 360 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
Dere04g1173 360 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Dere04g1173 360 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Dere04g1173 360 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
Dere04g1173 360 CDD AP2 109 165 IPR001471 GO:0003700|GO:0006355
Dere04g1173 360 MobiDBLite consensus disorder prediction 39 58 - -
Dere04g1173 360 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Dere04g1173 360 FunFam Ethylene-responsive transcription factor 2 108 167 - -
Dere04g1173 360 MobiDBLite consensus disorder prediction 223 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1173 Dere-ChrDere04 13106282 13107364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1173 7 225 AP2-EREBP Transcription Factor Family AT4G27950 48.889 2.07e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere04g1173 AP2 7e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1173 04 13106282 13107364 Dere04g1173 04 13106282 13107364 ECH