Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1172 ATGGGAAAGAAACTGGAGTTTTTGTTCATGCTCTCATCAGCCTTCGCGATTGGAGCATTCTTATGTGTTGGAGCCGACCCAACGGAAGATAAACAAGCCTTGCTCGACTTCCTTCACAACATAAATCGCTCTCGTTCTCTAAACTGGGATGAGAACTCTTCTGTATGCGATGGCTGGAGAGGAATCACCTGCAATAGTGACCGGACCAGAGTTATAGCCCTTCATTTGCCTGGAGCTGGACTGAGTGGTCCAATCCCACCCAACACCCTAAGTCGTCTCTCTGCACTACAGACTTTAAGTCTAAGATCCAATAGCATAACGGGTCCTTTTCCTTCTGGTTTTTCTGAGCTTAAGAATTTAACCTATCTTTATATTCAATTCAACAAGTTTGCTGGTCCATTGCCATCAGACTTCTCAGTTTGGAATAATCTTACTGTTGCTAATTTATCCCACAATTCTTTTAATGGGAGCATTCCTTCTTCGATTTCGGATTTGACGCATCTCTCATTTTTAGTCCTTTCCAATAACTCACTTTCAGGTGAAATTCCTGATCTTAATATTCCTACGCTGCAAGAGCTAAATCTAGCGAACAATAATCTTAGTGGGATTGTGCCTAAATCCCTTCTGAGATTCCCAAGTTGGGCTTTTTCTGGGAACAACCTTACATTTGCAAATGCTCAACCAGTAAAGAAGTCCTCAAAAAGACTCAGTGAGCCTGCGTTATTGGGTGTCATCCTAGGTGGTAGTGCGCTGGTATTTGTGGTGTTTGCAGCTTTCATGTTTGTGTGCTACTATGATAAAGGAGGTGCAAATGGGGTGTCTGCTAAATGCCAGAAAAAAGAAGTGTTTTTAAAAAAAGATGTCTCAGAGAGTCAAGAGAGAAAAAACAAGATTGTGTTCTTTGAGGATTGCAATCTTGTGTTTGACCTGGAGGATTTGCTGAGAGCATCTGCTGAGGTGCTGGGAAAGGGGACCTATGGCACAACATATAAGGCTGCTCTAGAGGATGCAACCACTGTGGTGGTGAAGAGATTGAAGGAAGTCACGGTCGGAAAACGCGAGTTTGAACAGCAGATGGAGGTGGTAGGGATGATTAGGCACGGCAATGTGGCTGCTCTAAGGGCATATTACTATTCCAAGGAGGAGAAACTCATGGTGTATGACTACTATGAACAGAGTAGCGTTTCCGTCATGTTGCATGGCAGAAGAGGGGAAGGAAAGATTTCTTTAGACTGGGATAGTCGGCTGAGAATTGCAATAGGTGCAGCAAGAGGCGTTGCTCACATCCATGCTCAACAAGGAGGAAAACTCACCCATGGAAACATAAAATCCTCGAACATCTTCCTCAACTCCCAAGGATATGGTTGCATGTCTGATATCGGTCTAGTAACACTGATGAGTCCAACACTCCCACCAGCCCTAAGAACTTCTGGCTACCGTGCCCCAGAAGTAACAGACGCTCGGAAAGCAAGCCATGCGTCCGATGTCTACAGTTTTGGGGTGTTGCTTCTCGAGCTTCTGACGGGAAAATCCCCCATACATGCCACAGGAAGCGAGGAAGTTGTCCACCTGGTTAGATGGGTGAATTCTGTGGTCAGAGAGGAGTGGACGGCAGAGGTGTTTGATGTAGAATTACTGAGATATCCAAATATAGAGGAAGAAATGGTAGAGATGTTACAACTTGGGATGGCATGTGCAGTACGAATGCCAGAGCAGAGACCAAAAATGGCAGATGTTTTAAGAATGGTGGAGGAAATTCATCGAGCAAATACTGGGAATCGACCATCAACTGAATCCAGATCAGAAGTTTCTACCCCAACTCCACAAGCAATCGACATACCTTCGCCCTCTGTTCCACAGCCAAAATCGGTAAATAACAGAATTCAGCGTTTCATCGTCCCTGAACCAGTTAACTTCAAAACTCTTTCTTCAACCAGAACTTGCCTGTCTCCCGAGAAGGAGAAGGGAAAAGCCAATCAATCAGAGAAAGGGGGTGGATCGATTCCGAAGCCGCGCCAGTCATTTTATAAGAGTCAATTGCCACCTCAAATCACTCAGTTTTCCATTTCACGCTCTTTCTTCTTCATTTTCTTCAATTCTCAGAAAGCCCAAAAGGAGGATCTCTCTCAGTTTTCTCTTTGGTACGATCTGTTATTCTGCTGGTCATGTTTCACCATGGCATCGAAGCGGATCTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCTACGTCTTGCAGCGCCGGTCCTGTTGCTGAAGACATGTTTCATTGGCAAGCAACAATTATGGGTCCTCCTGATAGTCCTTATGCTGGAGGTGTTTTCCTAGTTACCATTCATTTCCCTCCAGATTATCCATTTAAGCCACCCAAGGTTGCATTCAGGACAAAGGTATTCCATCCAAATATAAATAGCAATGGAAGCATTTGCCTTGACATATTGAAGGAACAATGGAGCCCTGCTCTAACTATTTCCAAGGTCTTGCTCTCTATTTGTTCCCTGTTGACGGACCCAAACCCTGATGATCCTTTGGTCCCTGAAATTGCCCACATGTACAAGACAGACAGGAACAAGTATGAGTCAACAGCAAGAAGTTGGACCCAGAAATATGCCATGGGTTAA 2622 0.4462 MGKKLEFLFMLSSAFAIGAFLCVGADPTEDKQALLDFLHNINRSRSLNWDENSSVCDGWRGITCNSDRTRVIALHLPGAGLSGPIPPNTLSRLSALQTLSLRSNSITGPFPSGFSELKNLTYLYIQFNKFAGPLPSDFSVWNNLTVANLSHNSFNGSIPSSISDLTHLSFLVLSNNSLSGEIPDLNIPTLQELNLANNNLSGIVPKSLLRFPSWAFSGNNLTFANAQPVKKSSKRLSEPALLGVILGGSALVFVVFAAFMFVCYYDKGGANGVSAKCQKKEVFLKKDVSESQERKNKIVFFEDCNLVFDLEDLLRASAEVLGKGTYGTTYKAALEDATTVVVKRLKEVTVGKREFEQQMEVVGMIRHGNVAALRAYYYSKEEKLMVYDYYEQSSVSVMLHGRRGEGKISLDWDSRLRIAIGAARGVAHIHAQQGGKLTHGNIKSSNIFLNSQGYGCMSDIGLVTLMSPTLPPALRTSGYRAPEVTDARKASHASDVYSFGVLLLELLTGKSPIHATGSEEVVHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQLGMACAVRMPEQRPKMADVLRMVEEIHRANTGNRPSTESRSEVSTPTPQAIDIPSPSVPQPKSVNNRIQRFIVPEPVNFKTLSSTRTCLSPEKEKGKANQSEKGGGSIPKPRQSFYKSQLPPQITQFSISRSFFFIFFNSQKAQKEDLSQFSLWYDLLFCWSCFTMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYESTARSWTQKYAMG 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1172 873 Gene3D Ubiquitin Conjugating Enzyme 721 873 IPR016135 -
Dere04g1172 873 Gene3D Ribonuclease Inhibitor 27 238 IPR032675 -
Dere04g1172 873 SMART ubc_7 729 872 - -
Dere04g1172 873 CDD UBCc 728 867 IPR000608 -
Dere04g1172 873 FunFam pollen receptor-like kinase 1 284 389 - -
Dere04g1172 873 Gene3D Phosphorylase Kinase; domain 1 281 389 - -
Dere04g1172 873 ProSiteProfiles Leucine-rich repeat profile. 189 210 IPR001611 GO:0005515
Dere04g1172 873 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 726 872 IPR000608 -
Dere04g1172 873 ProSiteProfiles Protein kinase domain profile. 315 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1172 873 FunFam Ubiquitin-conjugating enzyme 28, E2 726 873 - -
Dere04g1172 873 MobiDBLite consensus disorder prediction 588 621 - -
Dere04g1172 873 Gene3D Transferase(Phosphotransferase) domain 1 391 606 - -
Dere04g1172 873 FunFam Probable inactive receptor kinase RLK902 27 186 - -
Dere04g1172 873 Pfam Ubiquitin-conjugating enzyme 730 866 IPR000608 -
Dere04g1172 873 Pfam Protein kinase domain 318 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1172 873 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 799 814 IPR023313 -
Dere04g1172 873 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Dere04g1172 873 Pfam Leucine rich repeat 85 130 IPR001611 GO:0005515
Dere04g1172 873 SUPERFAMILY Protein kinase-like (PK-like) 319 584 IPR011009 -
Dere04g1172 873 SUPERFAMILY L domain-like 41 213 - -
Dere04g1172 873 PANTHER OS05G0588300 PROTEIN 15 597 - -
Dere04g1172 873 MobiDBLite consensus disorder prediction 590 621 - -
Dere04g1172 873 Pfam Leucine Rich Repeat 190 209 IPR001611 GO:0005515
Dere04g1172 873 MobiDBLite consensus disorder prediction 643 675 - -
Dere04g1172 873 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 390 597 - -
Dere04g1172 873 ProSitePatterns Protein kinases ATP-binding region signature. 321 352 IPR017441 GO:0005524
Dere04g1172 873 SUPERFAMILY UBC-like 721 872 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1172 Dere-ChrDere04 13084980 13093106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1172 25 607 Receptor kinase-like Gene Family AT4G23740 56.281 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Dere04g1172 Pkinase 5e-31 CL0016