Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1161 ATGAGTGGGTCCCACTCCAGTATGCGATTTCCTGGCATTCTCTGTCTCATTGGGCTATATATATCTGCATATTCGCGTGAGGCATGTAGCATGTACCTGAGATCTTTTGGCGAAAGCGATCAAGAGGGAAAAGGAAGGGATTTTGGTGAGTGTGTGAGGATTGGTGGGATGGGAAAGTGGTGTTTGGGTTTGGTGTTAGTGGTGGTGGTGGGTGTTGGAGTGGAAGGGTACCCAATTGAGGATTTGGTGGTGAGATTGCCTGGCCAACCAAAAGTTGGGTTCAACCAGTATGCAGGATATGTTGATGTTGATGTCAACCGTGGAAGGAGCTTGTTCTACTACTTTGTGGAGGCCCAAAGTGACCCTCATCATAAGCCTCTAACCCTTTGGCTCAATGGAGGTCCGGGATGTTCCTCCATTGGAGGAGGTGCCTTCACTGAATTGGGTCCCTTTTATCCTAATGGCGATGGCCGTGGCCTACGAAGAAATTCATTGTCGTGGAATAGAGCATCAAACCTGCTGTTCGTGGAGTCTCCAGCTGGAGTGGGTTGGTCATACTCAAATACAACTTCAGATTATACCTGCGGAGATGCGTCCACCGCCAACGATATGTATTTGTTCATGTTGAAATGGTACGAGAAGTTTCCGACGTTCAGATCAAGGGAGCTGTTTCTTACTGGAGAAAGCTATGCAGGACATTACATACCGCAGTTGGCTGATGTACTATTGGACCATAACGCTCGTTCAACTGGCTTCAATTTTAATATCAAAGGAGTTGCTATCGGAAACCCACTTCTGAAACTTGACCTGGATGTTCCAGCAACGTACGAGTTCTTCTGGTCACACGGTATGATTTCTGATGAAATTGGCCTTGCCGTCCTGAACGACTGCGATTTCGAGGATTACGTGTTTCCCGGTCCTCATAATGTATCTCGTGCATGCACTCTTGCCATGGCTGAAGCAAATCGCATGGTTGGTAACTATATAAACGATTACGATGTGCTTCTGGATGTCTGTTATCCGTCCATAGTTGAGCAAGAACTCAGACTGAAAAAGATGGCTACTAAGATAAGTTTAGGCGTTGATGTTTGTATGAGTTACGAAAGAAGCTTTTATTTCAACCTCCCCGAGGTTCAGAAGGCTCTCCATGCAAACCGTACCAGTCTGCCTTATGGCTGGTCCATGTGTAGTGGATTTTTAAACTACAGCTTGTCTGACGGTGACATCAACATCCTTCCAATTCTCCGAAAGATAGTTCAGAATCACATCCCAGTTTGGGTTTTCAGTGGAGACCAAGATTCTGTGGTGCCATTGCTGGGTTCGAGGACACTGGTGCGAGAACTAGCTCATGACATGAAGTTGGAGATTACAGTACCATATAGAGCTTGGTTCCACAAAGGCCAGGTGGGAGGATGGGTAACAGAGTATGGAAATTTGCTGACATTTGCGACAGTGAGAGGGGCTGCTCATATGGTGCCTTACGCACAGCCAGCGAGAGCACTGCGTCTGTTCTCTTCGTTCGTGCAGGGACGAAGGTTGCCTAATACTACACATCCTTCCATTGATGACTGA 1572 0.4695 MSGSHSSMRFPGILCLIGLYISAYSREACSMYLRSFGESDQEGKGRDFGECVRIGGMGKWCLGLVLVVVVGVGVEGYPIEDLVVRLPGQPKVGFNQYAGYVDVDVNRGRSLFYYFVEAQSDPHHKPLTLWLNGGPGCSSIGGGAFTELGPFYPNGDGRGLRRNSLSWNRASNLLFVESPAGVGWSYSNTTSDYTCGDASTANDMYLFMLKWYEKFPTFRSRELFLTGESYAGHYIPQLADVLLDHNARSTGFNFNIKGVAIGNPLLKLDLDVPATYEFFWSHGMISDEIGLAVLNDCDFEDYVFPGPHNVSRACTLAMAEANRMVGNYINDYDVLLDVCYPSIVEQELRLKKMATKISLGVDVCMSYERSFYFNLPEVQKALHANRTSLPYGWSMCSGFLNYSLSDGDINILPILRKIVQNHIPVWVFSGDQDSVVPLLGSRTLVRELAHDMKLEITVPYRAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPARALRLFSSFVQGRRLPNTTHPSIDD 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1161 523 Gene3D alpha/beta hydrolase 79 340 IPR029058 -
Dere04g1161 523 Pfam Serine carboxypeptidase 88 510 IPR001563 GO:0004185|GO:0006508
Dere04g1161 523 PRINTS Carboxypeptidase C serine protease (S10) family signature 480 493 IPR001563 GO:0004185|GO:0006508
Dere04g1161 523 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 175 IPR001563 GO:0004185|GO:0006508
Dere04g1161 523 PRINTS Carboxypeptidase C serine protease (S10) family signature 176 186 IPR001563 GO:0004185|GO:0006508
Dere04g1161 523 PRINTS Carboxypeptidase C serine protease (S10) family signature 211 236 IPR001563 GO:0004185|GO:0006508
Dere04g1161 523 Gene3D - 364 400 - -
Dere04g1161 523 FunFam Carboxypeptidase 411 510 - -
Dere04g1161 523 FunFam Carboxypeptidase 77 341 - -
Dere04g1161 523 SUPERFAMILY alpha/beta-Hydrolases 81 513 IPR029058 -
Dere04g1161 523 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 83 497 IPR001563 GO:0004185|GO:0006508
Dere04g1161 523 ProSitePatterns Serine carboxypeptidases, serine active site. 225 232 IPR018202 GO:0004185
Dere04g1161 523 Gene3D - 411 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1161 Dere-ChrDere04 12959677 12964462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1161 370 513 Calmodulin-binding Proteins AT2G22960 27.083 4.83e-12 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1161 04 12959677 12964462 Dere04g1161 04 12959677 12964462 ECH