Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1145 ATGCCACATAAAAGCGAAGCCGTGCATAGCGACGAAGATGATTCCGCTATTGATAAGAAATGCAGCACTTTCTTCGATGTCTATGGCCCCCAAGGCAAGGCAGATATTGTTTTTAAAACACCAGAATCTAATTCCACTTTGAATCTTCAGGACATTCAAGGACTTGTAACATGGGTTCTTGCTGAAGGATATATGCCTTCATGGGTTTTTATTAAGAACAAACCTCTTATTCCAAAAGTGGTTATGCTTTATGCACCAGGCCTAGATGCAGCTTTGTATTTGTCACAGTCTAAAAGGCTCCCCAGTTTAAAAAATTTCTTTGGCAATCCAAGGGCAGTCTTAGCTTTAAGCTGCGTATCAGATGGAATGCAGACAATAGATGCACTCCTAACATGCAAGATGAAAAGGAAGAGAGATGAAAGTAGTTCAGTTATGAAGAAGTCTACCCTGATATCTCAGCAAGAAAAAAATGGCAGTGATACAGATATTATGTCATTTATGGAGATTACAAAAGACATACCTTTTCCTGTTTCATATTATACACTTTCAGAGAAAGAACTGGAAGACAATGGATATTCATTTAAACAGCCAGGTTTTCTTTCTACTTTGCCAGCGCCTTTGGGATCTTCTCCATATGAAATGCTGGCTCTTGATTGTGAGATGTGCATAACAAGTGAGGGTTTTGAGCTTACAAGAATTACCCTGGTGGATTTCAAAGGACAGGTTGTGCTTGATAAATTGGTTAAGCCGTCAAATGCTATCATTGATTACAATACCAGGTTTAGTGGTATAACACCAGAGATGTTAAATGGAGTCACCACAAATCTGAAAGACATTCAGGATGAATTTCTAAAGCTGGTTTATCAAGAGACTGTCCTGGTTGGGCATTCTTTGGAGAATGATTTGTTAGCACTGAAGATCTCTCATGATTTGGTCATTGACACAGCAGTATTATACAAACACCCCCGAGGTTCATCTCATAAAACTGCTCTACGGATTTTGGCTAAGAAATTTCTTTCTCGGGAAATACAGCAATCAGGGAATGGACATGACAGCATTGAAGATGCTAGAGCTACAATGGAATTGGTGTTATTGAAGATCAGACACGGACCTGACTTTGGTTCTCCCCCATCCTTCCTGCGGAGAAAGCTCCTTTCCATTTTAAGCGAGTCTGGCAAAACTTCCTCTTTGATTGATAATATATCCATTGTAAAACGATATGCCTCTGAATCCTCTAATGCAATTCCAGTGACTTCTGATGATGAAGCACTTGCAAGGACCACCAAGGAGGTGAAGAATGATAAGGTACATTTTGTCTGGACGCAATTTTCAGAATTACATTCATACTTAAAGAAGCAAGCTGAGGATTCAGAAATCTTTAACAGAAGACTTGCAGAGATGATGTCATTGCTTACTTGTCAGAAGAATTCTGCTAAAGGCAAAGACATCAAGCTGAGTGCAACTAGTGAATTGAAGGAACTTCTAGCTCGCATGGATGCTAGAATTCAAACTCTGTATAGGTCTTTACCCTCTAATGCAATGTTGATAATTTGCACTGGTCATGGAGACACAGCAATCGTGCACAGACTGAGGAGAATGCTCGCGGAGCAGAATGAAACTAATTTATGTCGTGTGGAGATTGTGGAAATCTTAGAAGAGGTTCAAGCTCGAGCTGAGATAGCCTTATGTTTTGTAGGTGTAAAGCATTGA 1710 0.3982 MPHKSEAVHSDEDDSAIDKKCSTFFDVYGPQGKADIVFKTPESNSTLNLQDIQGLVTWVLAEGYMPSWVFIKNKPLIPKVVMLYAPGLDAALYLSQSKRLPSLKNFFGNPRAVLALSCVSDGMQTIDALLTCKMKRKRDESSSVMKKSTLISQQEKNGSDTDIMSFMEITKDIPFPVSYYTLSEKELEDNGYSFKQPGFLSTLPAPLGSSPYEMLALDCEMCITSEGFELTRITLVDFKGQVVLDKLVKPSNAIIDYNTRFSGITPEMLNGVTTNLKDIQDEFLKLVYQETVLVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHKTALRILAKKFLSREIQQSGNGHDSIEDARATMELVLLKIRHGPDFGSPPSFLRRKLLSILSESGKTSSLIDNISIVKRYASESSNAIPVTSDDEALARTTKEVKNDKVHFVWTQFSELHSYLKKQAEDSEIFNRRLAEMMSLLTCQKNSAKGKDIKLSATSELKELLARMDARIQTLYRSLPSNAMLIICTGHGDTAIVHRLRRMLAEQNETNLCRVEIVEILEEVQARAEIALCFVGVKH 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1145 569 CDD REX1_like 215 364 IPR034922 -
Dere04g1145 569 Gene3D - 211 371 IPR036397 GO:0003676
Dere04g1145 569 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 24 377 IPR047021 GO:0004527
Dere04g1145 569 SMART exoiiiendus 213 372 IPR013520 -
Dere04g1145 569 FunFam RNA exonuclease NEF-sp 210 374 - -
Dere04g1145 569 Pfam Exonuclease 216 362 IPR013520 -
Dere04g1145 569 SUPERFAMILY Ribonuclease H-like 214 366 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1145 Dere-ChrDere04 12776775 12785714 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1145 214 362 C2H2 Transcription Factor Family AT3G27970 27.647 5.35e-07 50.1