Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1144 ATGTCATTAGTTAGATCTGCTGAGCTGGCTGCTACATCATGTAGAAATGCCAAACTCTACTCACTGAAGGGAACTGATGTTAAGCCTGGCTTGTCCTCCCAAATTTTTGGTCCTGATAAGCACAGAAGAATGTACATGACAGATTCTTACTCCAGTGAGAGTTATGAGAAGTACTTCCATGATTCACCAACAGAAGAACTGACTGAACCATCTAGTTCTGGCGTTTCAAGCAATTCATTTCGCCCAGATGATGCTTCTTACCAGCCCAGAGCTAGCTCAGGAGCTTCTATGGTTGCTACTAACCCATTTGATACTTCTTTGATGTCCACAAGGCGCCATGACGCCTATCATCATTCCAACTTCAGTTCAGATTTCTTAGAAAGTGAGGGCCTGGATGCCCTTGACTTCAATGGTCAAATGAGATCAAAACTGCAAGAATTAGAGAAGGCCCTTCTTGGTGATAATGATGATGAGGAGGAGGAGGAAGATCTATTTGGGACTGCTCGAAGCATGGACATTGACCCTGAGTGGGGTGATTCCGTTCAGAATATGCTGGTCCATGACTCACCAAAGGAGTCTTCGTCCTCAGGTTCTAATCTTAGCAGCATCAGTAGCAACAAAGAAATATCACAAATCTCTCCTCGTACCGCCAGGCAACTGCTTCTTGAATGTGCAGGTGCACTTTCAGAAGAACATGTCAACGAAGCATTGGTTATGATAAATAATCTCCGGCAGATGGTCTCAATTCAAGGAGATCCTCCCCAAAGAATTGCAGCCTATATGGTGGAAGGACTTGCAGCTCGCATGGCTGAGTCTGGCAAATGTATTTACAAAGCTCTGAAATGCAAGGAACCACCTTCTTCAGACCGTCTTGCAGCCATGCAGATACTGTTTGAAGTTTGCCCATGTTTTAAATTTGGATTCCTTGCAGCAAATGGTGCAATCACAGAGGCAGTCAAAGATGAAAAGAGAGTTCATATTGTGGATTTTGACATCAATCAAGGAAACCAATACATAACTCTAATACAAACACTTGCTTCAAGACCGGGTAAGCCACCCCAAGTGAAATTGACTGGGGTTGATGATCCTGAGTCTGTCCAGCGTTCGGTTGGAGGCCTAAAGATTATAGGACAAAGACTTGAAAAGCTGGCAGAAGCACTAGGGTTGCCATTCCAGTTTCAAGCTGTGGCATCAAGGGCATCAGCTGTCACTCCTTCAATGCTCAAGTGTCGGCCCGGTGAAGCACTTGTGGTGAACTTTGCATTTCAGCTTCATCACATGCCGGATGAGAGTGTTTCGACCGTAAACCAACGAGACCAACTCCTCCGCATGGTTAAGAGCCTAAATCCCAAACTTGTAACAGTTGTGGAACAAGATGTGAACACTAACACCACCCCATTCTTCCCACGATTTGTTGAAGCCTACAATTATTATTCTGCTGTTTTTGAGTCTCTTGATGTAACTCTTCCTAGGGAGAGTCAGGACAGGATGAATGTTGAGAGACAATGCTTAGCAAGGGACATTGTCAATATTGTTGCATGTGATGGCGAGGATCGGATTGAACGGTATGAAGTTGCAGGGAAATGGAGAGCAAGGATGACCATGGCTGGCTTCACTTCGTCCCCAATGAGCACTCGTGTGACAGACTCAATTCGGAAACTCATTAAGCAGTATTGTGACAGGTACAAGATGAAGGAGGAAATGGGCGAACTTCATTTTGGATGGGAAGACAAGAATTTGATTGTAGCTTCAGCGTGGAGGTGA 1764 0.4484 MSLVRSAELAATSCRNAKLYSLKGTDVKPGLSSQIFGPDKHRRMYMTDSYSSESYEKYFHDSPTEELTEPSSSGVSSNSFRPDDASYQPRASSGASMVATNPFDTSLMSTRRHDAYHHSNFSSDFLESEGLDALDFNGQMRSKLQELEKALLGDNDDEEEEEDLFGTARSMDIDPEWGDSVQNMLVHDSPKESSSSGSNLSSISSNKEISQISPRTARQLLLECAGALSEEHVNEALVMINNLRQMVSIQGDPPQRIAAYMVEGLAARMAESGKCIYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFLAANGAITEAVKDEKRVHIVDFDINQGNQYITLIQTLASRPGKPPQVKLTGVDDPESVQRSVGGLKIIGQRLEKLAEALGLPFQFQAVASRASAVTPSMLKCRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDVNTNTTPFFPRFVEAYNYYSAVFESLDVTLPRESQDRMNVERQCLARDIVNIVACDGEDRIERYEVAGKWRARMTMAGFTSSPMSTRVTDSIRKLIKQYCDRYKMKEEMGELHFGWEDKNLIVASAWR 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1144 587 ProSiteProfiles GRAS family profile. 208 587 IPR005202 -
Dere04g1144 587 MobiDBLite consensus disorder prediction 65 99 - -
Dere04g1144 587 Pfam GRAS domain family 218 587 IPR005202 -
Dere04g1144 587 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 187 582 IPR005202 -
Dere04g1144 587 MobiDBLite consensus disorder prediction 56 99 - -
Dere04g1144 587 MobiDBLite consensus disorder prediction 187 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1144 Dere-ChrDere04 12773871 12775634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1144 1 587 GRAS Transcription Factor Family AT1G21450 65.093 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere04g1144 GRAS 2.3e-136 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2569 05 36243998 36245755 Dere04g1144 04 12773871 12775634 CCT
Dere04g1144 04 12773871 12775634 Dere04g1144 04 12773871 12775634 ECH