Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1143 ATGGAGGATTCTTCATCAGCAGCTGAGGACACCAAGACTTGCCCTCGTGGCCACTGGAGGCCCGCCGAGGATGAGAAACTCCGCCAACTCGTCCAACAATATGGTGCCCAGAACTGGAATTCTATTGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTTAATCAGCTTGATCCTAGGATTAACAGAAGGCCATTTACAGAAGAGGAAGAAGAGAGGCTGCTGGCAGCTCACCGTATCCATGGGAACAAGTGGGCACTCATAGCAAGGCTTTTCCCAGGTCGTACTGATAACGCTGTGAAGAATCATTGGCATGTTATAATGGCTCGCAAGCAAAGAGAACAATCTAAGTTATGCGGGAAGAGAAGCTTCCAGGATGCTTATAATTATAATGATTCTAATTACACTTCCTACGACAAGATTACATCAAGTTCTCATCAAGATGTATTAATTAGCTCCTGCAGATCAATTACTGGGTTAGAGAATGCCAGATTCTTTGACTTCCGGAACCTTGATCATAAAGATAGGATATTTGCAGATAGATCTCCCTCCACTTCTTCCTTGGCTTCTTGGAATTTTGCAACCTCCTCATCAAACGGTTCTCCTGTGGTAGATTCTTTTAGAAGAGAAGGCAGAGATTATTTCAATCCTCACTCCAATCGTTACCTATCGGAATATTCAAAAGGTTCAGATAGGTTACTCTACAGAATTTATCCAAGTTCTTCAGCAAACTACAGGAGGGTTGTTCCAAGTGCTTTAGGACTTTTGGGTTCAGGTGATGATGGAAGGACAAAGGGGGACTTCACCAGTTTCTGCGATAACGCCACATTCACAAAGCTTCGGGCATCAACGGAGCAAGCACAAGCAGATCATGATCCTATTGAACAGAAAGAAGTTCCATTTTTTGATTTTCTTGGTGTGGGTGTCTCTTCGTCATAA 954 0.4361 MEDSSSAAEDTKTCPRGHWRPAEDEKLRQLVQQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQDAYNYNDSNYTSYDKITSSSHQDVLISSCRSITGLENARFFDFRNLDHKDRIFADRSPSTSSLASWNFATSSSNGSPVVDSFRREGRDYFNPHSNRYLSEYSKGSDRLLYRIYPSSSANYRRVVPSALGLLGSGDDGRTKGDFTSFCDNATFTKLRASTEQAQADHDPIEQKEVPFFDFLGVGVSSS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1143 317 SMART sant 15 64 IPR001005 -
Dere04g1143 317 SMART sant 67 115 IPR001005 -
Dere04g1143 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 62 IPR017930 -
Dere04g1143 317 Gene3D - 16 67 - -
Dere04g1143 317 Gene3D - 70 131 - -
Dere04g1143 317 PANTHER MYB PROTEIN-RELATED 16 158 - -
Dere04g1143 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Dere04g1143 317 ProSiteProfiles Myb-like domain profile. 16 62 IPR001005 -
Dere04g1143 317 MobiDBLite consensus disorder prediction 1 22 - -
Dere04g1143 317 FunFam MYB transcription factor 16 67 - -
Dere04g1143 317 Pfam Myb-like DNA-binding domain 19 79 - -
Dere04g1143 317 CDD SANT 79 110 IPR001005 -
Dere04g1143 317 FunFam MYB transcription factor 69 140 - -
Dere04g1143 317 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dere04g1143 317 CDD SANT 19 60 IPR001005 -
Dere04g1143 317 SUPERFAMILY Homeodomain-like 15 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1143 Dere-ChrDere04 12761283 12762665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1143 14 123 MYB Transcription Factor Family AT1G17950 83.636 2.70e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere04g1143 Myb_DNA-bind_6 1.8e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1143 04 12761283 12762665 Dere05g2568 05 36228368 36233700 CCT
Dere04g1143 04 12761283 12762665 Dere04g1143 04 12761283 12762665 ECH