Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1135 ATGGAGAGTCCTCCTTCGCCTTCTTATGTCGTCATTGCATGTGATGCTACCAAAGATCGCTGCGAGCACGAGATCAAGCTCATTATTGATCGCTTACGAAATACCGATGGCATTTTGTATGCAGGTTATAGATTGCTAGTGCTCGGGGTCTTGCATAAGGTGCCTCACCCCATGGGGTACCAGATGTTAGCATGCCCTGAGTCTTTTTCTGGCACAAGCTTTCGTGCAATGGAGGACGAAGTTGGCAAGAAACTTGATGCATATGCAAGTGTTCTTTTGCCGAGTCATGCAATTTGTGAAAATGAAGGGATCAATGTCGAAGTCAAAATCACAGCAGGGTTTCCAATTAAACAGGTTATTTTGCAAGAGGTTGCACACTATCATGCAGTTTGGGTTGTACTCGACAGGCACCTTAGACGGGACTTGAGATACCTTAACAAGATACCATGCAATGTTGCATTGGTTAAAGATGACTACTCTGTGGGTATCTGGAGAACTAATCAAACGCTCGAAACAGATGTCACAGAAAGCAAGCTTGTCTATTCTTTGTCTAAATTTGTTTCACTATCGGGTTGTCATAGTATTGCAGATATCTGGCAGTCTATTGCCTCTTTCCAAAGCTGTCCCTCATCCATGGTTTCTTCTGATAACTTAGACATGTCTAGGAGCAGCTTAAAGCAGTCATTTGCATCACGTGAGCAATTCTCCTCATTAGATTTTGGGTCAACTTCCAAGTCAGGTGTAAGCAACAAAGGAGAGTATAAACATCCCCTTACTTCTCGGATTGTCCAAAATCGAAACAAATTTGGCTTTATACCAAAATCTTCAGATGCACCAATTCTTTGTGCCGGTTGTGGGACACGGACTGAATTGCATACTAAGGAGTCAATGAGGTTCAACTATTCTGATATATTGCTTGCAACAGATGGTTTTTCAAAGGATAACTTGTTAGGTGAAGGTGGTTATGGTCACGTATACAAGGGAATTCTTAGAGATGGACAGCAAATTGCTGCAAAAGTACGAAAAGAAGAAAGTACACAGGGGTTTTCTGAATTTCATTCTGAGGTTTATGTCTTAAGTTTTGCTCGACACAAGAACATAGTGATGCTGCTGGGTTACTGTTGCAAAGAAAGGCAAAATATTTTGGTATATGAATATATTTGCAACAAGTCTCTTGACTGGCATTTATTCGATAAAGACGCAGCCGTTCTTGAGTGGCACCAAAGATATGCTATTGCCATTGGAACTGCAAAGGGATTGCGCTTTCTGCATGAAGAATGCCGTGGGGGCCCCATTATTCATCGGGATATGCGACCAAGCAATATCCTCCTTACTCATGATTTTGTTCCCATGCTAGGTGACTTTGGCCTTGCCAAATGGAAGACTGGTGGTGATGAGACTATGCAAACGAGGATAATGGGCACATTCGGATATGTTGCTCCTGAGTATGCTGAAGATGGTATTGTTTCTGTGCGGACAGATGTGTATGCTTACGGCATTCTTCTGTTACAATTGATATCAGGACTCAAGGTGGGCAGGTCCAATGATCCAGAACAACTCCCTCTCCGGCAATGGGCTGAGCCATTGATTGAGAATTTGACTTTACACGAACTCATTGACCGTCGTCTTGGAGAGTCATTTGACACATACGAACTATACCTTATGGCGAAAGCAGCATACTTCTGTGTGCAAAGAAAGCCTGAGATGCGACCGTCAATGGGAGAGGTTGTGCGCCTTCTTGAAGGAGAAAATGACCACTTCCATACCTTAGCAAATCAGTTTGTACCGGATTACAATAAGTGA 1803 0.4293 MESPPSPSYVVIACDATKDRCEHEIKLIIDRLRNTDGILYAGYRLLVLGVLHKVPHPMGYQMLACPESFSGTSFRAMEDEVGKKLDAYASVLLPSHAICENEGINVEVKITAGFPIKQVILQEVAHYHAVWVVLDRHLRRDLRYLNKIPCNVALVKDDYSVGIWRTNQTLETDVTESKLVYSLSKFVSLSGCHSIADIWQSIASFQSCPSSMVSSDNLDMSRSSLKQSFASREQFSSLDFGSTSKSGVSNKGEYKHPLTSRIVQNRNKFGFIPKSSDAPILCAGCGTRTELHTKESMRFNYSDILLATDGFSKDNLLGEGGYGHVYKGILRDGQQIAAKVRKEESTQGFSEFHSEVYVLSFARHKNIVMLLGYCCKERQNILVYEYICNKSLDWHLFDKDAAVLEWHQRYAIAIGTAKGLRFLHEECRGGPIIHRDMRPSNILLTHDFVPMLGDFGLAKWKTGGDETMQTRIMGTFGYVAPEYAEDGIVSVRTDVYAYGILLLQLISGLKVGRSNDPEQLPLRQWAEPLIENLTLHELIDRRLGESFDTYELYLMAKAAYFCVQRKPEMRPSMGEVVRLLEGENDHFHTLANQFVPDYNK 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1135 600 FunFam Lectin-domain containing receptor kinase A4.3 387 600 - -
Dere04g1135 600 ProSiteProfiles Protein kinase domain profile. 311 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1135 600 Gene3D Transferase(Phosphotransferase) domain 1 388 594 - -
Dere04g1135 600 SUPERFAMILY Protein kinase-like (PK-like) 293 581 IPR011009 -
Dere04g1135 600 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 264 584 - -
Dere04g1135 600 ProSitePatterns Tyrosine protein kinases specific active-site signature. 432 444 IPR008266 GO:0004672|GO:0006468
Dere04g1135 600 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Dere04g1135 600 Gene3D Phosphorylase Kinase; domain 1 283 386 - -
Dere04g1135 600 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 283 386 - -
Dere04g1135 600 Pfam Protein tyrosine and serine/threonine kinase 314 579 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1135 Dere-ChrDere04 12698096 12708969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1135 240 585 Trihelix Transcription Factor Family AT1G70460 40.171 5.09e-76 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Dere04g1135 PK_Tyr_Ser-Thr 4.1e-37 CL0016