Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1129 ATGTTCTGCTCAGTTTCAGTCGGCGTTGACAACGAAGGACTGGTTTCTGCGTACCAAACTTGCCCTGAGATTATTAAAAGACGTCATTGGAATCTGAGAGACATGGCTAATACTGCGGCAGCCTGTGCAGAGAGGGCAACTAGTGACATGCTGATTGGTCCGGACTGGGCAATTAACATAGAGTTGTGTGATATCATTAATATGGACCCTAGGCAAGCAAAGGATGCATTAAAGATACTCAAGAAGCGTTTGAGCAGTAAAAATCCCAAAATACAACTTCTGGCTCTTTTTGTACTGGAGACTCTCAGCAAAAATTGTGGTGAAAATGTATTTCAGCAGATCATTGAGCGGGATATTTTGCATGAAATGGTAAAGATAGTGAAGAAGAAGCCGGACTTAAATGTCAGGGAAAAGATACTGATTTTAATTGATATGTGGCAAGAAGCTTTTGGCGGTCCAAGTGGAAGGTTCCCCCAGTACTTTGCAGCATATAATGAACTAAGGTCTGCTGGAGTTGAATTTCCACCACGGGAAGAGAATAGGGCACCATTGTTTACTCCTCCTCAAACCCAGCCAACTGTTTTTCCTACTACTGATTATGAGGATGCTGCTATTCATGCTTCTCTCCAATCGGATGCTTCTGGCCTTAGCTTACCAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAATGCTTAGCGCTTTGGATCCAAAATATCCTGAGGCTGTGAAGCAAGAAGTGATTGTTGACCTTGTTGATCAGTGCCGTTCTTACCAAAAACGCGTCATGCTTCTTGTGAACGATACCACGGATGAGCAGCTTTTAAGTCAGGGATTAGCACTGAATGACAGCCTGCAACGTGTACTTGATCGACATGATGATATTCTAAAAGGAACTCCTAATTCAGGTGCAACTGCAAGAGTAACAGAAACTTCTGGTCTGCCACTTGTGAATGTAAACCACGAGGATGATGAGTCTGAAGATGATTTTGATCAGCTAGCCCGTAGGTCATCAAGAGATACCCATTCAATGGGTCGGAAACCAGCCAATGACAAGGCAGAAACCGTGAGAGTAAATCAAATTCTTCCCCCACCACCAGCATCAAGAAAGCCAGTCGTCTCTGATTCTGGCATGATTGACTATCTGAGTGGTGATGCATACAAAGGCTACTCTAATAACTCTGAACCAACACCATTTTCGGTTCCACCTCATTCTAGCCCTAATCCGACCTCATCAACAACTCCAACTCTGTCTACCTCACCACCTTCTCATGTTATCAGTACTTCATCGCCAACTTTTACCAGACAACCTGTCTATGATGACCCGTCTCCCATGAGCAAATCTCCAGAACACCTTCCTTCTGCTCCTTGGGACACCCAATCTCCTGGTGGACTTCCACCCCCACCGTCCAGGCACAATCAGAGACAACAGTTTTTTGAGCAACAAGGTGTATCTCATTCAAGTAGCGGATCCAATTCCTCTTATGATAGCTTGGTGGGACAAACGCAGAATTTGTCTTTGAATTCATCTACCCCAACTAAACAAGAGAAACCAGAAGATGCCCTTTTCAAAGATCTGGTTGACTTTGCAAAATCCAAGACCTCTTCATCTTCTAAACCCAATAGGTCATATTGA 1644 0.4386 MFCSVSVGVDNEGLVSAYQTCPEIIKRRHWNLRDMANTAAACAERATSDMLIGPDWAINIELCDIINMDPRQAKDALKILKKRLSSKNPKIQLLALFVLETLSKNCGENVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDMWQEAFGGPSGRFPQYFAAYNELRSAGVEFPPREENRAPLFTPPQTQPTVFPTTDYEDAAIHASLQSDASGLSLPEIQNAQGLADVLMEMLSALDPKYPEAVKQEVIVDLVDQCRSYQKRVMLLVNDTTDEQLLSQGLALNDSLQRVLDRHDDILKGTPNSGATARVTETSGLPLVNVNHEDDESEDDFDQLARRSSRDTHSMGRKPANDKAETVRVNQILPPPPASRKPVVSDSGMIDYLSGDAYKGYSNNSEPTPFSVPPHSSPNPTSSTTPTLSTSPPSHVISTSSPTFTRQPVYDDPSPMSKSPEHLPSAPWDTQSPGGLPPPPSRHNQRQQFFEQQGVSHSSSGSNSSYDSLVGQTQNLSLNSSTPTKQEKPEDALFKDLVDFAKSKTSSSSKPNRSY 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1129 547 CDD VHS 44 169 - -
Dere04g1129 547 SMART VHS_2 39 171 IPR002014 GO:0035091|GO:0043130
Dere04g1129 547 CDD GAT_GGA-like_plant 220 298 - -
Dere04g1129 547 Pfam VHS domain 43 150 IPR002014 GO:0035091|GO:0043130
Dere04g1129 547 Gene3D - 32 193 IPR008942 -
Dere04g1129 547 ProSiteProfiles VHS domain profile. 46 175 IPR002014 GO:0035091|GO:0043130
Dere04g1129 547 SUPERFAMILY ENTH/VHS domain 35 176 IPR008942 -
Dere04g1129 547 MobiDBLite consensus disorder prediction 413 444 - -
Dere04g1129 547 Gene3D - 209 307 IPR038425 -
Dere04g1129 547 PANTHER TOM1-LIKE PROTEIN 36 543 IPR044836 GO:0035091|GO:0043130|GO:0043328
Dere04g1129 547 MobiDBLite consensus disorder prediction 321 379 - -
Dere04g1129 547 MobiDBLite consensus disorder prediction 473 519 - -
Dere04g1129 547 Pfam GAT domain 227 301 IPR004152 GO:0035091|GO:0043130
Dere04g1129 547 PIRSF TOM1 30 546 IPR014645 -
Dere04g1129 547 MobiDBLite consensus disorder prediction 392 525 - -
Dere04g1129 547 FunFam TOM1-like protein 2 38 185 - -
Dere04g1129 547 SUPERFAMILY GAT-like domain 179 301 - -
Dere04g1129 547 ProSiteProfiles GAT domain profile. 212 300 IPR004152 GO:0035091|GO:0043130
Dere04g1129 547 MobiDBLite consensus disorder prediction 333 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1129 Dere-ChrDere04 12605269 12611145 Dispersed/Wgd