Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1123 ATGAAACTGGCATGGGTGGCCTGCACACTGGCAGTTGCAGCAGCACTATCTAAACCAGTTTGCGACAGCTGGTGTGGGAATGTCGGCATCCCCTTTCCTTTCGGCACAAGCGCAGACTGCTACAGAGATCCAACTTTCCTTATAACCTGCGACACTTCGTCTGGACACCCCATCCCATATTTAACAAATGGTAACATTCCAGTCCTCAACATCTCCATTGATACTGCTGAGTTGCGTGTCACTTCTCGGGTGTCTTATGATTGCTATAATTCCGACGAATCCCTCAATGGTACTAGCAAGTGGGACTTTAGGCTTGCCAAGTTTGCCATATCCAATACAAAGAACAAATTCATGGTGGTGGGATGTGACACCTACGCTTACATCCACGATCTCAACGAAAACAGGTTTGAAACTGGTTGCAGGTCCGTTTGCAGGAACTCCACATACGTGACGAATGGATCCTGCACCGGGGTAGGCTGCTGCCAGACCACTTTCCCCAAAGCCATTACGAATTACAATATTGGTATTGGTAGTTTTAACAAACACACCGATGTGTGGGACTTCAATCCTTGCAGCTATGCATTTCTTGTGGAGGACGGATCCTTCAATTTCTCCTCTCAATACCTCCTAGATCTCAGGAACAAAAAACGATTTCCATTGGTTCTCGACTGGGCTGTTGACAATCACACATGCGCTGAAGCCAAGAAAAACACAAGCACCTATGCCTGCAAGGACAACGTCTGCCGAGATTCAAAAAGTGGTATTGGCTACATCTGCCAATGTAAACCAGGATTCCGAGGGAACCCTTACGTCTCTCACCCCGATGCTGGCTGCCGAGATGTTAATGAGTGCAGCGAATCCCACAATTGCAGTAATCATGCCACATGCCACAATTTCGAAGGTAGCTACAACTGTTCTTGTCTACTTGGATACACAGGCGATGGCTACACCTGTTCTTTGGGCAACCAGTCTACTTATAATTTGCGTATCCTTCAAATAGCACTAGGTGTTAGTGTTACCACTGTGGTTCAGGGCACACTTGGATACTTGGATCCAGAGTACCTCCACACAGGTCAGTTGAATGAGAAGAGTGATGTCTATAGCTTCGGGGTTGTGCTCGTAGAGCTACTCACTGGGAATAAGGCAGTTGAACTCAGCAGGACAGAACAGAGAAATTTGGCTATGTACTTTGTGTCATCAATGAAAGAAGACCGTTTATGGGAAATTCTTGATAGGCGAGTGCTGGACCAGAAGAAGAATGCAGAGCAACTGAAGGAAGTTGCTTTCTTGGCAAAGAGGTGCGTTAGAGTTAATGGAGAGGAGAGGCCGACTATGAAGGAAGTAGCAATGGAGTTGGAGGGTCTGATTGCTATGGAAAAGCATCCTTGGGTGAAGGGCAAGGATCTGACGTCAGAAGAAAGCGAATACTTACTTGGTCATGTGCCCCATGAATATGGGGCCGCTAGTGCTATTAATTCAGCTGCTTATGATAGCATACAGAAGCAGATAGCATTTGAGATTGCAGATGGGCGATGA 1536 0.4668 MKLAWVACTLAVAAALSKPVCDSWCGNVGIPFPFGTSADCYRDPTFLITCDTSSGHPIPYLTNGNIPVLNISIDTAELRVTSRVSYDCYNSDESLNGTSKWDFRLAKFAISNTKNKFMVVGCDTYAYIHDLNENRFETGCRSVCRNSTYVTNGSCTGVGCCQTTFPKAITNYNIGIGSFNKHTDVWDFNPCSYAFLVEDGSFNFSSQYLLDLRNKKRFPLVLDWAVDNHTCAEAKKNTSTYACKDNVCRDSKSGIGYICQCKPGFRGNPYVSHPDAGCRDVNECSESHNCSNHATCHNFEGSYNCSCLLGYTGDGYTCSLGNQSTYNLRILQIALGVSVTTVVQGTLGYLDPEYLHTGQLNEKSDVYSFGVVLVELLTGNKAVELSRTEQRNLAMYFVSSMKEDRLWEILDRRVLDQKKNAEQLKEVAFLAKRCVRVNGEERPTMKEVAMELEGLIAMEKHPWVKGKDLTSEESEYLLGHVPHEYGAASAINSAAYDSIQKQIAFEIADGR 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1123 511 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 296 307 IPR000152 -
Dere04g1123 511 SMART egfca_6 280 319 IPR001881 GO:0005509
Dere04g1123 511 Pfam Wall-associated receptor kinase galacturonan-binding 21 81 IPR025287 GO:0030247
Dere04g1123 511 SMART egf_5 230 279 IPR000742 -
Dere04g1123 511 SMART egf_5 283 319 IPR000742 -
Dere04g1123 511 Pfam EGF domain 286 318 IPR024731 -
Dere04g1123 511 Pfam Protein kinase domain 340 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1123 511 ProSiteProfiles EGF-like domain profile. 280 319 IPR000742 -
Dere04g1123 511 Gene3D Laminin 270 319 - -
Dere04g1123 511 PANTHER OSJNBA0016N04.9 PROTEIN 9 285 - -
Dere04g1123 511 ProSitePatterns EGF-like domain signature 2. 305 318 IPR000742 -
Dere04g1123 511 CDD EGF_CA 280 314 - -
Dere04g1123 511 ProSitePatterns Calcium-binding EGF-like domain signature. 280 305 IPR018097 GO:0005509
Dere04g1123 511 SUPERFAMILY Protein kinase-like (PK-like) 338 449 IPR011009 -
Dere04g1123 511 SUPERFAMILY EGF/Laminin 278 320 - -
Dere04g1123 511 Gene3D Transferase(Phosphotransferase) domain 1 321 472 - -
Dere04g1123 511 FunFam Fibrillin 2 275 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1123 Dere-ChrDere04 12574793 12579378 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1123 339 511 Receptor kinase-like Gene Family AT1G21230 51.705 4.64e-42 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Dere04g1123 Pkinase 3.1e-11 CL0016