Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1104 ATGGGTTTGAACGCATTGCATTTGAATATGAAACTGGCATTACTGGTGTGCACGGTGGTAGCTGCAGCAGCACAATCGAAAGCGGGTTGCAACAGCCGGTGCGGTAACCTGAGCATCCCCTATCCCTTTGGCACGAGTGAAGACTGCTATAGAAATCCAGATTTCCTTATAACCTGCAACTCTTCGTCTGGAAAGCCCACACCATATCTAAGAAACGGCAACATTCAAGTCCGCGACATCACTCTGGATACTGGTGAGATGCGCGTCTCTGCTGGGGTTTCCCATCTTTGCTATGAACCCAACGGCGAAATTAAAAGGGGTCGCACCTCCTTCAGGCTTAAGAAGTTTGCCATATCCAATACAAAGAACAAATTCACGGTGGTGGGGTGTGACACCTACGCTTACATTACAGACCTCACGGGAAATGGGTTCACAACAGGGTGCATGTTGATTTGTGATAACATCACAGATGTCGTCAATGGGGCCTGCTCTGGGGTTGGCTGCTGCCACACCACTTTCCCCAAAGACATTATGAATTATAATATTAGTATACGTAGTTATAAGAACCACACCTTAGTGCGGGACTTTAATCCATGCGGCTATGCATTTCTCGTGGAGGACGGATCGTTCAATTTTTCCTCCCAAGACCTCCTTAATCTACGAAACAAAACAAAATTTCCTGTCGTTCTCAATTGGGCTGTTGACGCTCAGACATGCACCGAAGCCTTAAAACATCCAAGCACCTATGCTTGCAAGCAGAACAGCGAATGCAAAGAATCAGAAAGTGGTATTGGCTACCTCTGCAAATGTAAGGATGGGTTCCAAGGCAATCCCTACCTCTCTCATCCGGATACAGGCTGCAAAGATAAAAATGAGTGCCGCAAACAGAACCGTTGCAGTATGAGATGTCACAATATCGATGGTAACTATACTTGTTCTTGTCCCCCGGGATACAAAGGCGATGGCTACATTGATGGATCAGGCTGCAAATTACCTATCGTTGAAGTATTATTAGGCATTAGTGTAGCCTTGCTGGTTGTATTCACGCTGGTCTCCACATTATGCTGGGTGCACAAGCAAAGAACCTTGAAACAACTCAGGGGAAGATATTTCGAGCAGAATGGGGGAACCATACTACTACAACAACTATCACAGCGGCAAGGATACACTGACAGAACCAAGATTTTTAGCGAAGTTGAACTTAAGAATGCCACAAACAACTTCGACGAACGCAGAATCCTTGGTCATGGAGGACAAGGAACAGTTTACGAGGGTATATTACCGGACAACACTCTTGTTGCCATTAAGAAGTCCAGAGTAGGAGGGGATCCCCAACAAATTAAGGATTTCATCAATGAAGTCTATGTGCTTTCCCAAATCAACCATAGGAATGTGGTCAAACTTTTGGGCTGTTGTCTTGAAACCGAAGTTCCTTTGTTAGTTTATGAGTTTGTGGACAACGGTACTCTTCTCGACCGCATAGATCCATTAAAGAATGAGTGCTCTCTTTCATGGGAGAACCGATTAAGGATAGCTGCAGAAACTGCTGAGGCTATTTCCTATTTGCACTCAGCTGCTTCTATTCCGATTATTCATCGGGATATTAAATCTGCCAACATACTTTTAGACCATAATCACAGAGCAAAGGTGTCTGACTTCGGAGCTTCAAGACTTGTTCCTCTTGATGAAACTCAGGTTACCACCGTGGTGCAGGGCACACTAGGATATTTAGATCCGGAGTACCTCCACACAGGACAGTTGAATGAGAAGAGTGATGTCTATAGCTTCGGGGTTGTGCTCGTGGAGCTACTCACTGGGAATAAAGCCGTTGAATTCAATAGGCCAGAAATGAGAAATTTGGCTATGTACTTTACGTCTTCAATGAGAGAGGACCGTCTTTGGGAAATTCTTGACAGGCGAGTGTTGGACCAGAAGAAGAACGCAGAGCAGCTAAAGGAAGTTGCTTTTTTGGCAATGAGGTGTGTTAAAGTACAAGGAGAGCAAAGGCCAACTATGAAGGAAGTAGCAATGGAGCTAGAGGGTTTGATTGCAATGGAAAAGCATCCTTGGGGGAAGGGCGAGGACCTGATGACAGAAGAAAGTGAATACTTACTTGGTCATGTACCTGATGGATATGGGGCTGCTTGTGCTAGTAATTCAGCAGCCTATGATAGCATACAGAAAGAGATAGCACTTGTGATTGCAGATGGGCGATGA 2217 0.4515 MGLNALHLNMKLALLVCTVVAAAAQSKAGCNSRCGNLSIPYPFGTSEDCYRNPDFLITCNSSSGKPTPYLRNGNIQVRDITLDTGEMRVSAGVSHLCYEPNGEIKRGRTSFRLKKFAISNTKNKFTVVGCDTYAYITDLTGNGFTTGCMLICDNITDVVNGACSGVGCCHTTFPKDIMNYNISIRSYKNHTLVRDFNPCGYAFLVEDGSFNFSSQDLLNLRNKTKFPVVLNWAVDAQTCTEALKHPSTYACKQNSECKESESGIGYLCKCKDGFQGNPYLSHPDTGCKDKNECRKQNRCSMRCHNIDGNYTCSCPPGYKGDGYIDGSGCKLPIVEVLLGISVALLVVFTLVSTLCWVHKQRTLKQLRGRYFEQNGGTILLQQLSQRQGYTDRTKIFSEVELKNATNNFDERRILGHGGQGTVYEGILPDNTLVAIKKSRVGGDPQQIKDFINEVYVLSQINHRNVVKLLGCCLETEVPLLVYEFVDNGTLLDRIDPLKNECSLSWENRLRIAAETAEAISYLHSAASIPIIHRDIKSANILLDHNHRAKVSDFGASRLVPLDETQVTTVVQGTLGYLDPEYLHTGQLNEKSDVYSFGVVLVELLTGNKAVEFNRPEMRNLAMYFTSSMREDRLWEILDRRVLDQKKNAEQLKEVAFLAMRCVKVQGEQRPTMKEVAMELEGLIAMEKHPWGKGEDLMTEESEYLLGHVPDGYGAACASNSAAYDSIQKEIALVIADGR 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1104 738 SMART serkin_6 408 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1104 738 Pfam Protein tyrosine and serine/threonine kinase 411 679 IPR001245 GO:0004672|GO:0006468
Dere04g1104 738 Gene3D Phosphorylase Kinase; domain 1 380 484 - -
Dere04g1104 738 SMART egfca_6 289 330 IPR001881 GO:0005509
Dere04g1104 738 CDD EGF_CA 289 321 - -
Dere04g1104 738 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Dere04g1104 738 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 682 IPR045274 GO:0007166
Dere04g1104 738 FunFam Fibrillin 2 284 325 - -
Dere04g1104 738 Pfam Wall-associated receptor kinase galacturonan-binding 30 90 IPR025287 GO:0030247
Dere04g1104 738 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 303 314 IPR000152 -
Dere04g1104 738 Gene3D Laminin 292 331 - -
Dere04g1104 738 Gene3D Laminin 245 291 - -
Dere04g1104 738 FunFam Wall-associated receptor kinase 2 378 484 - -
Dere04g1104 738 CDD STKc_IRAK 414 682 - -
Dere04g1104 738 ProSitePatterns Calcium-binding EGF-like domain signature. 289 312 IPR018097 GO:0005509
Dere04g1104 738 ProSiteProfiles Protein kinase domain profile. 408 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1104 738 ProSiteProfiles EGF-like domain profile. 289 321 IPR000742 -
Dere04g1104 738 Gene3D Transferase(Phosphotransferase) domain 1 485 696 - -
Dere04g1104 738 SUPERFAMILY EGF/Laminin 289 322 - -
Dere04g1104 738 SUPERFAMILY Protein kinase-like (PK-like) 389 679 IPR011009 -
Dere04g1104 738 SMART egf_5 292 330 IPR000742 -
Dere04g1104 738 SMART egf_5 238 288 IPR000742 -
Dere04g1104 738 FunFam Wall-associated receptor kinase 2 485 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1104 Dere-ChrDere04 11938617 11941423 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1104 1 738 Receptor kinase-like Gene Family AT1G21230 46.834 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Dere04g1104 PK_Tyr_Ser-Thr 1.1e-47 CL0016