Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1089 ATGGAAATTGAGGATGGGACTTGCAATGGGGATAACACAGAATGTTCTGAAGCGGTTCATTGCTTGAAGAGTGAAGCTGTAAATAATGGGGTTGCAGATAGGAATGATATTAAAAAAGGAGTTCAGCGCTTGAGAAGTGAACCTGTGAATAATGGGGTGGTAATTGCAGATGGGAACGATGTTGCCGAAGGAGACTCTGGTGGAGTCGAAAGTTTTCGAACTTACAAGAGGCGTAAGCATGTAAAGTTGAGTTCAGAGAACAAAGCTCAAGAAGATTGCAGAGCATACGTAGAAGCTGCAAGTCAAATAGCTGGCCAGGCTGCCAAGGAACTATGTAATGTAGCTGTAGGAAATACTTCAGACAATTATTCACATGGACGTTGGGGAAATATTGTACTAAAGCATTTGTATCAGTCATTAGGTGATGATAAAGGTGGCATAGAAGGGTGCATGAGGGAAGCACTCATGCGCTATCCTAAAATTAGTTGTTCCACTACTGTAAAGGGAACTTGTAAAATTGACAAAGATGGACAAGAATACTGCTCACAATCTGAGATGTGTCATAGATTACAGAGGGAAGTTAATGGGCATGCAAATGTCTTGCATAACGGATGTTCTAATGAGTCAGATGGACCTGATGTGACTGAGATGTGTCAGCGTGCACTCTGTAATATCTTAGTCTCTGAGAAATTCAGTTCATTATGTAAGGTGCTAATTGAAAATTTCAAAGGAATGAAACCTGAAAGTGTATTTGACTTCAGTGTCATTAACAAAAGGTTGAAAGATCGAGCTTACGAACAGTCACCTACACTTTTCTTGTCAGATATTCAACAGGTTTGGAGAAAGCTTCAAGACACTGGCCATGAGATTGTTTCTCTAGCCAAGAGCCTTTCAAACATGTCAAGAACTTTATACTGTGAGCAGGCTGGAGTTTCAGTACACAGCACATTCAAAGATGGAAAGCAAGAGTTCTGTAACCAGGAATCTGACTCTCACATGAAACCAGAGAAACCAGAGCAGACAGAAGATTGCAGCATGTATAAAATTTGCACTTGCAGGCATTGTGGAAAGAAAGCAGATGGGGCAGACTGTTTGGTTTGTGATTCATGTGAGGAGATATATCATGTCTCATGTATTGAGCCTGCTGTCAAAGAGATACCCCACAAAAGCTGGTACTGTGCCAAATGCACTGCTAGTGGAATTGGATCTCCACATGAAAACTGTTTGGTGTGTGAAAGGTTGAACGTTTCAAAAGCCCTGAACAACCTAGTTTTTGATGAAACTACAAATGAGGAAACAATTAATGAATTCGAAGAGAATTCAAATTGCACTTATGATGGGGCACAAGCGGCTAGAAGGGGGAAAAACAACTCTGATTGCAAAATTTGTGGAAATGAAGTGGATGGTGAAAGAATGAAAATCTGTGGCCACTCTTTCTGCTCCAATAAATACTACCACGTAAGGTGTTTGACAAGTAAGCAGTTAAAGTCATATGGTCCCTGTTGGTACTGCCCTTCATGTTTATGCCAAGTTTGTATGACTGATAAAGATGATGATCAGATTGTGCTCTGTGATGGCTGTGATCATGCATACCACATCTATTGCATGAAGCCTCCACGAACTTCTATTCCAAAAGGGAAATGGTTCTGCAGAAAGTGTGATACAGGGATCCAAGCAATACGCCGGGCAAGAAAGGCTTTCGAGAGTAACAAGCAGAGAAAAACAAGTCAAGATGGTTCAAAGTCAAGTGATATTTTTGGAAAGAAATGGAACAATAAACATGGAGGAGAATTGGAAAAAAGTGAAGGAATGGACATGCTTTTAACTGCAGCCAATACTCTGAATTTCGAAGAGGACTTGGCTGCAATCCAGACAGAGAGAACATGA 1887 0.4081 MEIEDGTCNGDNTECSEAVHCLKSEAVNNGVADRNDIKKGVQRLRSEPVNNGVVIADGNDVAEGDSGGVESFRTYKRRKHVKLSSENKAQEDCRAYVEAASQIAGQAAKELCNVAVGNTSDNYSHGRWGNIVLKHLYQSLGDDKGGIEGCMREALMRYPKISCSTTVKGTCKIDKDGQEYCSQSEMCHRLQREVNGHANVLHNGCSNESDGPDVTEMCQRALCNILVSEKFSSLCKVLIENFKGMKPESVFDFSVINKRLKDRAYEQSPTLFLSDIQQVWRKLQDTGHEIVSLAKSLSNMSRTLYCEQAGVSVHSTFKDGKQEFCNQESDSHMKPEKPEQTEDCSMYKICTCRHCGKKADGADCLVCDSCEEIYHVSCIEPAVKEIPHKSWYCAKCTASGIGSPHENCLVCERLNVSKALNNLVFDETTNEETINEFEENSNCTYDGAQAARRGKNNSDCKICGNEVDGERMKICGHSFCSNKYYHVRCLTSKQLKSYGPCWYCPSCLCQVCMTDKDDDQIVLCDGCDHAYHIYCMKPPRTSIPKGKWFCRKCDTGIQAIRRARKAFESNKQRKTSQDGSKSSDIFGKKWNNKHGGELEKSEGMDMLLTAANTLNFEEDLAAIQTERT 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1089 628 ProSiteProfiles Zinc finger RING-type profile. 460 507 IPR001841 -
Dere04g1089 628 MobiDBLite consensus disorder prediction 566 598 - -
Dere04g1089 628 FunFam PHD finger protein EHD3 isoform A 236 400 - -
Dere04g1089 628 PANTHER OS02G0192300 PROTEIN 251 398 - -
Dere04g1089 628 SUPERFAMILY FYVE/PHD zinc finger 508 559 IPR011011 -
Dere04g1089 628 ProSiteProfiles Zinc finger PHD-type profile. 349 399 IPR019787 -
Dere04g1089 628 Pfam PHD-finger 352 398 IPR019787 -
Dere04g1089 628 Pfam PHD-finger 509 554 IPR019787 -
Dere04g1089 628 ProSiteProfiles Zinc finger PHD-type profile. 506 556 IPR019787 -
Dere04g1089 628 SMART PHD_3 351 397 IPR001965 -
Dere04g1089 628 SMART PHD_3 459 508 IPR001965 -
Dere04g1089 628 SMART PHD_3 511 554 IPR001965 -
Dere04g1089 628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 559 IPR013083 -
Dere04g1089 628 Gene3D - 242 399 - -
Dere04g1089 628 SUPERFAMILY FYVE/PHD zinc finger 455 508 IPR011011 -
Dere04g1089 628 SUPERFAMILY FYVE/PHD zinc finger 334 397 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1089 Dere-ChrDere04 11701235 11708534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1089 508 571 C2H2 Transcription Factor Family AT3G01460 50.000 1.91e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere04g1089 PHD 2.4e-13 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2548 05 35996621 35999532 Dere04g1089 04 11701235 11708534 CCT
Dere04g1089 04 11701235 11708534 Dere04g1089 04 11701235 11708534 ECH