Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1084 ATGAAAATGCTGCAAAAGGGAACGGCCGGAGAAACCCACGACGGCAACTCCGGTGGCCGGACGGTAGTGGTAGGTATGAAGTTGGACTCCCCTAGCCGAGAGCTGCTCACTTGGGCTTTGGTCAAAGTCGCTCAGCCTGGTGATGTTGTGGTTGCTCTGCATGTTCTTGGGAACAATGAAATCGTCAATCGAGATGGAAAGTTGTCCATTCTTTCGCTTGTCGACGCATTCGACTCTATTCTTGCCGTTTATGAAGGTTTCTGCAATTTGAAACAGGTGGATCTCAAGCTCAAAGTTTGCAGAGGTTCATCAGTTCGAAAAATTTTAGTCCGAGAAGCAAATGCTTATTCTGCAACTCATATTATAGTCGGTACAGCCCATGGCCTCCATACCATTCGTCCATCTACCTCCGTAGCTAAGTACTGTGCTCGAAAGTTATGCAAGAACTGCTCTGTTCTTGCTGTTAATAATGGGAAAGTTGTTTTCAAGGGAGACGGCTCTCCAGCAACTTCTTCTCACTTACAAGGAAATATGCATGGTAGAGCTTTTCTGGAGTCTAAAGAAACTGTTGTTCAGAAACCAAGCTGCTCAATAAGTGGCCCAATTTCTGCATTGCCAACCACTTCTTGCCACCATTCTGCCGAAGAGTCTTCTGGTGACGGTGGTGGTACTTACGAGAATGCTTTGGCTCTAGTGCCTGTACAGACAACTGAGGCACCGCCAAGTACAAAGACCACCTTGTCTGTTAGTAAATTACCCGAGCTGAAACCTGGTTGGCCACTACTACGACGAACAATTTTATCAGATAGGGAGTCTCACGACACATCATCGATGCCCCAGATAACTGTGGTCCAGTGGGCAATGCAGTTGCCCTGTAGAAATCTTTCATATGATACAGATCATGATCACAGACAAACTGTGGCCTTAAAGGGCAAAAGTGGTGCTATTGTTCCAATGGATGTTGTAATAAGGACTAATTCTTCTTCACCTGACAGCAATTCAAGAAGCATTCCTAAAGAATTGGAGGGTCTCCACGAGAAATACTCATCCACCTGCAGACTGTTTGAGTACCCAGAACTTGTACTGGCAACATCAAATTTCTCGCGAGGAAATTTGATTGGGAAAGGAGGAAGTAGTCGGGTTTACAGAGGTTGCCTTCCTGATGGCAAGGAACTTGCCGTTAAGATCTTAAACCCTTCTGATAATGTTTTACAGGAGTTCCTATTGGAAATAGAAATTATCACTACCTTGCATCATAAAAACATCACTTCCCTCCTGGGTTTCTGCTTTGGCGATGGGAATCTTCTTTTGGTCTACCATTTTTTATCAAGAGGAAGCCTTGAAGACTACCTTTATGGGAACAAGAAAAATCCCCTTGTTTTTGGTTGGACTGAGAGATATAAGGTGGCAATGGGTGTTGCTGAGGCTTTGGATTATCTACATAACAATGGTGCTCAATCTGTGGTCCATAGGGATGTAAAGTCATCAAATATATTATTATCTGAGGACTTTGAACCTCAGCTCTCTGATTTTGGCCTTGCTAAATGGGTGTCAACCTCATCTTCACATATAACATGCACAGTTGTTGCTGGAACTTTCGGTTACTTGGCTCCTGAGTACTTCATGTATGGCAAAGTCAATGCTAAGATTGATGTCTACGCATTTGGTGTCGTACTCCTTGAGCTTCTTTCGGGAAGAAAACCCGTAGGTGGTGATTATCCTAAAGGTCAAGAGAGCCTCGTTATGTGGGCAACTCCAATTCTTAATGATGGGAAGGTGTCACAATTGTTAGATCCAAGTTTGGGTGATAACTATGATCATCAACAGATGGAGAGAATGGTCTTGGCTGCCACACTTTGTATCAGACGTGATCCTAGAGCTAGGCCTCATATGAGCCTTATTTCAAAGCTTCTTCAAGGTGACGTTGATGTGATCAAGTGGGCAAGGATAGAAGTTAATGCTTCGGAGACACTCGGAAAGCTTGGCGATGAATCTTGCCCACCTTCTAATATACAGTCACATCTTCATCTTGCACTGCTTGATGTGGAGGATTACTCGCACTCCATGTGCAGTGTTGAGCAGAATGAGTCGTTGGAGGACTACTTGAGAGGCCGGTGGAGCGGATCATCAAGCTTTGACTGA 2142 0.4449 MKMLQKGTAGETHDGNSGGRTVVVGMKLDSPSRELLTWALVKVAQPGDVVVALHVLGNNEIVNRDGKLSILSLVDAFDSILAVYEGFCNLKQVDLKLKVCRGSSVRKILVREANAYSATHIIVGTAHGLHTIRPSTSVAKYCARKLCKNCSVLAVNNGKVVFKGDGSPATSSHLQGNMHGRAFLESKETVVQKPSCSISGPISALPTTSCHHSAEESSGDGGGTYENALALVPVQTTEAPPSTKTTLSVSKLPELKPGWPLLRRTILSDRESHDTSSMPQITVVQWAMQLPCRNLSYDTDHDHRQTVALKGKSGAIVPMDVVIRTNSSSPDSNSRSIPKELEGLHEKYSSTCRLFEYPELVLATSNFSRGNLIGKGGSSRVYRGCLPDGKELAVKILNPSDNVLQEFLLEIEIITTLHHKNITSLLGFCFGDGNLLLVYHFLSRGSLEDYLYGNKKNPLVFGWTERYKVAMGVAEALDYLHNNGAQSVVHRDVKSSNILLSEDFEPQLSDFGLAKWVSTSSSHITCTVVAGTFGYLAPEYFMYGKVNAKIDVYAFGVVLLELLSGRKPVGGDYPKGQESLVMWATPILNDGKVSQLLDPSLGDNYDHQQMERMVLAATLCIRRDPRARPHMSLISKLLQGDVDVIKWARIEVNASETLGKLGDESCPPSNIQSHLHLALLDVEDYSHSMCSVEQNESLEDYLRGRWSGSSSFD 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1084 713 MobiDBLite consensus disorder prediction 1 20 - -
Dere04g1084 713 Pfam Universal stress protein family 20 155 IPR006016 -
Dere04g1084 713 FunFam Putative receptor-like serine/threonine-protein kinase 442 654 - -
Dere04g1084 713 MobiDBLite consensus disorder prediction 205 225 - -
Dere04g1084 713 ProSiteProfiles Protein kinase domain profile. 367 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1084 713 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 19 156 - -
Dere04g1084 713 Pfam Protein kinase domain 369 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1084 713 Gene3D Phosphorylase Kinase; domain 1 331 441 - -
Dere04g1084 713 Gene3D HUPs 19 157 IPR014729 -
Dere04g1084 713 PANTHER OS08G0249100 PROTEIN 157 649 IPR046958 -
Dere04g1084 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 488 500 IPR008271 GO:0004672|GO:0006468
Dere04g1084 713 ProSitePatterns Protein kinases ATP-binding region signature. 373 395 IPR017441 GO:0005524
Dere04g1084 713 SMART serkin_6 367 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1084 713 CDD USP_Like 21 155 - -
Dere04g1084 713 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 336 441 - -
Dere04g1084 713 SUPERFAMILY Protein kinase-like (PK-like) 348 637 IPR011009 -
Dere04g1084 713 Gene3D Transferase(Phosphotransferase) domain 1 442 654 - -
Dere04g1084 713 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1084 Dere-ChrDere04 11640266 11643422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1084 354 634 Trihelix Transcription Factor Family AT1G68690 44.755 3.85e-72 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Dere04g1084 Pkinase 4.4e-42 CL0016