Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1083 ATGGTAGATGATGCGGCAGGGAAGTCTGTTATCGAGCAGCATCGTTCAGAATTTCCAGTGCGGTCTGTTCCTGTGGAGCATTCCTGTTCTGAAGTAGCTTGCAATATGTTGGACTCTAATGTTGACCTCTCCAATATTCTGGATGGTTGTAAAGATTTCTCTACAAATGAAGAATCTGGTTCTGCCAGCTGCATTGATCTTAGGGACATTTCCAGCTATGCTAGGACAAGTGAATGTGCAAATGCTGATATGTTGCTAGTCGAGAAAACCTTGGACGATGATAGCCAGAATTGTTTCAGCACATTTTCCGGGCAATGTGAAGTTTCTAACCTAGAAAATGGTGGGTTATGCTCAGAAGAAAAACCTCTCGACTATGATGATGCTGAAATGCCATCAGAGTTTATATCTGTCAATGTTTCGCGTGCAGGAGATACTTTAGTGGTTGTGGAGGAAAAAAACGATGATGATAGATTGCTCACAGATGCTGGCAATCGTATATTTGATTTCGGCCATTCTGAACTGTCCTTGCAATCGGAACCCATGACTAGCTTTCTAGTCAATTGCCACAAAAAGAACCAGCAGGAGGACATTTTGAGAAATAGAGATTCCTTGGAGGTTGTAGACAACTGCAATGCTTTCTGTGGGATGGATACAGCTGTTTGCAAGGGGATATCTCCTGCACAGGATAGTGAAGTGCCCTCAGATGCAATATATACAAAAGGCGATGCTTTATGTGGGATAGAAGTGGCTGTTTGCAATCAAATATCTCCTTCACAAGCTAGTGAAGTGTCGTCAGATGCATTGTATACAGAAACAGGGAGCACCAGTGATCAGCTGCATGATCAGAAAGATGGTGAGGATTGCAATAGTCCTTATGAAGAAAAGGTTGAAGACTTTGTTGATAAAAGGAGTATCATTGATACATATGTCCAAGTATTGTCCCCACCAGCCTGCCAGAGGATTTTGGGTAGTTCAACTGTAGCTTATTCACTGAGTGAGGCTTTACAATTGGAGCAGGGGATTAATAAGAGTGACATTGTTTCTTATGCAGATGTTACAGAAGTTCTGGAGCAAAATGTTGATGTTATAAATGAAATAAATTTTGCAATGAAGGACAATGTATTGCAAATAGAAGGTAATTCCTGTAACTTGAAGGACAATTCCCCAGAAACTTCTGCCAACTGTACCTTTTCTTTTGAATCATATCTTCCCTCCATTGTTTCTTTTAGCAATAGCCCTTCAAAGGTTGTGCCTGATGTTCTACTCAAGGATAATAACTGTTCTATCAGTTATAATAGCGCTGTGTGCAATTCTGGGCAGAATGATTATGAAGGAAAAGATATTGTCAAAGTTGATTGTGTCACTGAAAGCAAATGTTCAGAAATTGTATTATTGCCTGCTAAAGGGAACAGTCGACGAAGAAAGTCTGGTCGTAAGCCACAGACCAAAAGGGCTTCAAGAAAATGCAATAAGCAAGCCAATGTGCCTCAACTGGGGTGGGGTATGAAGACATTCTTAATGGCCACTAGAAAGAAAAGAAGCTGTTTCTCCAAACCAGCTCGCTCTTCAGTCTGGGGATTACTAGACAACATTAAACAGTTTTTTGAACAGCATAGTGAGTTAGGGGTAAATGAAGCTATTGGTGAAGGATATGTGAAGGAGTGGGGCAGTGGTCAAAGTGGAAAAATAAATAAAAATGCTGCAAAGTCTAGCTCATTGAGTTCAATGCTGAACTGTGGTGCTTCAGCTACTCGATTTCGCCTGAAGATCAAAGTTGGGAAAGGATTTGATTTAAGTTGCCCAAATGTCTTGGTTTCAGAGGGTGTTGATGGCGCATCGTGCTTGGGACCTGGTGGTTCACAAAAGTTAGCTGGCAATACTGGAGATAAACTCTTTGAAGATGTGGCCATGGGCAAGTTTGAATCTTATAAATATAACTTGGACAAGGATGCTGATGTTCTGATTGGGCAAATTGCCAATAACCACTCAAAAAGTGCCACATTAACAAAAAAGTCAGATGGTGATGCAGAGGAACTTTGTCTAGCGGTTCCTTCAAAAAGGTTGGTTGACACCTTGATAGAGCCTGTCAATATTAAGGGTGTGGATCCTGGAACTGGAACTTCACCTGCTTCAGAGGTAATTGATTCAATTCCTGAAGTCCTAGTGGAAGAAAGGCATGAAGGTCTGAATGATACTGATTGTGGTTCTTCTAAGGAGTTTAATTTTGCTTTTAATGATACTACCAGAGAGAGAGGGAAGAAGAAAGATAAGCTTACTTGTTCAAATAATTGTAGTATTAAAGATGGATCACAGGGACCACCAAGGAAAAATAAAGCAAAGTACCCAAAGAATCATCAACGAAAGAAGAATTTCACTAATGTGGTTAGCTCTATGGAATTGCCTACTTTGACTGATATAAATACATTAAGCAATTCTGTAAGCTGTGGAGAATTACACAAAGAACCATTGTGCATTTCTGGAGAGAGTGGACTTGGAAACCTCACTGATGCTTTGGAAGTCAAAGGTTGCAAGGAGGATAAGACACATTGCAGCCTAGATGTTGGCAATGGAAATTCAGAATCCCCAGGTGTTGAAAATTTTCTATCTCCTGAGAGACATTTGGGATGTAAACTTCCCAAGAGTCTTAAAACTAGTAAAGTCAGCAAGACCATGTCCAAAGCTTCTGAGTCAAAGAGCCGGAAAGGTACTACTTGCAGACGTGGAGAGGAACTGAAGATACCTGTCAATGAGAGTGATGTTAAGGGAAGAGGTGTTGCTGATGAAGTTAAGTGTGAAATAGCAGATCACCTACATACAGAACACGGGATTGATGGAGAGCACAATTTGGATTCTTTTGCAAAAATTAATACTGACAGCAACATAGTATCATTCAATTTATCTAATCTGGACATGGTACCTGGTGTTGGTTTTGGGGAGCAGAATCTATTACCACGTAATGCATGGGTGCGTTGCGATGATTGCCACAAGTGGCGGCGTATTCCAGCTGCACTTGCAGACCTAATTGAAGAAACAAATTGCACCTGGACATGTAAGGAAAGCGATGATAAAGCTTTTGCTGATTGCTCTATCGCTCAGGAAAAGTCAAATGCAGAGATCAATGCAGAGTTGGGATTATCAGATGCATCTGGTGAAGAAGATGCTTATGAAGATTGTAAAAACTATAAGGAGTTGGAACAACAACGCCCGATGTTCCCTCAGGAATCAACTTTTATTGGTATTTCTACCAATGAGTTTCTGCATCGTAGCCGCAAAACTCAGACTATCGATGAGGTCATGGTTTGCCATTGCAAACCACCTCCCAAAGGTCAGTTGGGTTGTGGAGATGAATGTCTGAACCGTATGCTTAACATTGAATGTGTTCAAGGAGCCTGCCCATGTGGGGATATTTGTTCGAATCAACAGTTCCAAAAATGCAATTATGCCAGACTGAAGTGGTTTAAATGTGGGAAAAAGGGTTATGGGCTGAAGGCGCTTGAGGATATATCTGAAGGACAGTTCCTTATTGAATATGTTGGAGAGGTGCTTGATGTGCATGCTTATGAGGCACGACAAAGAGAATATGCTTTGAAAGGTCATAGACATTTCTACTTCATGACCTTAAATGGAAGTGAGGTGATAGATGCGAGTGCAAAAGGAAATTTGGGCCGTTTTATTAATCATAGTTGTGATCCTAATTGTCGCACAGAAAAGTGGATGGTGAATGGAGAAATCTGTATTGGACTGTTTGCATTGAGAGATATTAAGCAGGATGAAGAGGTGACATTTGATTACAACTATGTTAGGGTTTTTGGTGCTGCTGCCAAAAGATGTTATTGTGCTTCACCTCAATGTCGAGGTTATATTGGTGGTGATCTACATAATGCTGAAATCATTGTTCAAGGTGATTCAGATGAAGAATTTCCAGAACCTGTGATGCTTACTGAAGATGGCAAAATTGATGATGGGTCAAATGGTAGTCCAGAGATGGAGAGTTCTCTGATCCCTGCCTCTGCTACCTCTCAGTTGCACCGCTCATTAGAAGTGGAAGACTCAAAGGGCAATTTATTATCTTCTGTTCAAGTGAAAGAACTTTCCCAACAAATGGTGGATGTAACAAGCAAACCCCTTCCTGTAGTACAAAAAGGATATGCAGTAGAATCGGAGCTTTCTGACAAAACTTCTTTGATTACGAAATTAGAGACTTCCTCCACTTCATCTGTCAGCAAATCCAAGTCTGAAACAATTGAAGACAGATATGGTCCTTCAGAACTTCATCTGCTTGTGAAGACTTCACGAATAAATGGTTCTGTTAAGAAGGGAAAGGTACGTGCTAATCCTCCAAATGGCCTCAAAGCTGAGGCAACAACTATCAGGTTGCAGGTGCCGTCCATCAAACATAAAAAAGTAGTGGAAGCTTCTTCCAATGGCCGTTTTGAAGCAGTTGAGGAGAAGCTTAAGGAGTTGCTGGATTCAGATGGAGGAATAAGTAAAAGTAAAGATGCCACCAAAGGCTACTTGAAGCTTCTGCTTCTCACTGTGGCATCAGGTGATAGGAGTAATGGCGAAGCCATTCAAAGCTGCAGCAACCGAGATCTTTCCATGATTCTTGGTGCCCTTATGGAAACTAGATCTAGAGCTGTGCTGAATGATATAATTAACAAAAATGGTTTACGCATGTTACATAACATAATGAAGCAATACAGGGGGGACTTCAAAAAAATTCCGATACTACGAAAGCTTCTTAAGGTCTTAGAGCGCCTAGCAGAGAGAAAGATTTTGACATTTGAACATATTAATGGCGGTCCTCCTTGTCCTGGAATGGAGAGCTTTAGGCAGTCAATGTTGTCTCTGACAGAGCATGAAGACAAAGAGGTCCATCAGATTGCTCGAAGCTTCCGCGACAGATGGATTCCTAGATCTTTTAGAAAATATGGCTTTATAGATAGGGTTGATTATAGGGTGGAATCTTACAGGCGTTTCAAGTGCAATAGATTTTCAGCATCACCGAACTATAGATGTGAGCAGGATTTAAGACCTACAGAAGCAATAGATTGTGTGCAGCAGTCAATGGCTGTAACAAGTTCAGTCAATGCTGGTGCTCAGGAGGGCTGCTCTGCACCATCTCTGAATGGGTGTGAAGTTAACAGAGGAAAGAGACGTAAACGCAAAAGCCGATGGGATCAACCAGCAGAGACAAATTCACATATAGTATCTTATGTGCAGGAGGAGGACAAAGTTGCCTCTGGGCTGTCAAAGCAAACTGATGAAATCATCAATTCTCTTGTTGGAAGGCAGAACATTTCTGAAGATGTTCCACCTGGGTTTTCATGTTTATTTCAGCCTCTGGGTTCTTTAAATGCCTCCCTGAACTCTGGTGATCTTGCTTTGCAAAATGCGAGCCATTCTGATTCTGGATGTCCCTCTGATGTAGTTATAGCTCATCCAAAGGAAAAATTTAACTCTCGCTTGCATGTTTCATATGGAGTTCCATGGCCTGTTATCCAACAGTATGGAACACCTCATGCAGAAACTGCAGACAGTTGGGTCACTGCACCAGGCATGCCTTTCAACCCATTTCCTCCACTACCCCCTGATCCACCGCAGAAGAAAGACTGTCAGTCTTCTAATGCTACTGATGCTATGAAAATAGATCAACCAGCTGAAGTTGTGAAGCGGGATACCAGTGGTCTAGGTAGTTGTTACTCGGATGATATGATTCCCTGCACAACTGATGCCGATGCTGGAGACTTTTCATACGAAAATAATAACTACATTTCTAAACGACTGAAGAGTTCCCCAAGTGATTTGGGAAGAAGTTACTTTAGACAGCAGAAATGGAATAAATCGAAAATACCTCGACCATGGTCCAGGAGGAATTTATGGGGATGTAATGAGAGCAACTCTAGGGGTAATTTGTGCAGTATAGGTGTAGTAGATGTACCAGAGGATGCAATTTGTAAAGCTGAGAAAGATGGCAATAATATATAA 5988 0.4137 MVDDAAGKSVIEQHRSEFPVRSVPVEHSCSEVACNMLDSNVDLSNILDGCKDFSTNEESGSASCIDLRDISSYARTSECANADMLLVEKTLDDDSQNCFSTFSGQCEVSNLENGGLCSEEKPLDYDDAEMPSEFISVNVSRAGDTLVVVEEKNDDDRLLTDAGNRIFDFGHSELSLQSEPMTSFLVNCHKKNQQEDILRNRDSLEVVDNCNAFCGMDTAVCKGISPAQDSEVPSDAIYTKGDALCGIEVAVCNQISPSQASEVSSDALYTETGSTSDQLHDQKDGEDCNSPYEEKVEDFVDKRSIIDTYVQVLSPPACQRILGSSTVAYSLSEALQLEQGINKSDIVSYADVTEVLEQNVDVINEINFAMKDNVLQIEGNSCNLKDNSPETSANCTFSFESYLPSIVSFSNSPSKVVPDVLLKDNNCSISYNSAVCNSGQNDYEGKDIVKVDCVTESKCSEIVLLPAKGNSRRRKSGRKPQTKRASRKCNKQANVPQLGWGMKTFLMATRKKRSCFSKPARSSVWGLLDNIKQFFEQHSELGVNEAIGEGYVKEWGSGQSGKINKNAAKSSSLSSMLNCGASATRFRLKIKVGKGFDLSCPNVLVSEGVDGASCLGPGGSQKLAGNTGDKLFEDVAMGKFESYKYNLDKDADVLIGQIANNHSKSATLTKKSDGDAEELCLAVPSKRLVDTLIEPVNIKGVDPGTGTSPASEVIDSIPEVLVEERHEGLNDTDCGSSKEFNFAFNDTTRERGKKKDKLTCSNNCSIKDGSQGPPRKNKAKYPKNHQRKKNFTNVVSSMELPTLTDINTLSNSVSCGELHKEPLCISGESGLGNLTDALEVKGCKEDKTHCSLDVGNGNSESPGVENFLSPERHLGCKLPKSLKTSKVSKTMSKASESKSRKGTTCRRGEELKIPVNESDVKGRGVADEVKCEIADHLHTEHGIDGEHNLDSFAKINTDSNIVSFNLSNLDMVPGVGFGEQNLLPRNAWVRCDDCHKWRRIPAALADLIEETNCTWTCKESDDKAFADCSIAQEKSNAEINAELGLSDASGEEDAYEDCKNYKELEQQRPMFPQESTFIGISTNEFLHRSRKTQTIDEVMVCHCKPPPKGQLGCGDECLNRMLNIECVQGACPCGDICSNQQFQKCNYARLKWFKCGKKGYGLKALEDISEGQFLIEYVGEVLDVHAYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKQDEEVTFDYNYVRVFGAAAKRCYCASPQCRGYIGGDLHNAEIIVQGDSDEEFPEPVMLTEDGKIDDGSNGSPEMESSLIPASATSQLHRSLEVEDSKGNLLSSVQVKELSQQMVDVTSKPLPVVQKGYAVESELSDKTSLITKLETSSTSSVSKSKSETIEDRYGPSELHLLVKTSRINGSVKKGKVRANPPNGLKAEATTIRLQVPSIKHKKVVEASSNGRFEAVEEKLKELLDSDGGISKSKDATKGYLKLLLLTVASGDRSNGEAIQSCSNRDLSMILGALMETRSRAVLNDIINKNGLRMLHNIMKQYRGDFKKIPILRKLLKVLERLAERKILTFEHINGGPPCPGMESFRQSMLSLTEHEDKEVHQIARSFRDRWIPRSFRKYGFIDRVDYRVESYRRFKCNRFSASPNYRCEQDLRPTEAIDCVQQSMAVTSSVNAGAQEGCSAPSLNGCEVNRGKRRKRKSRWDQPAETNSHIVSYVQEEDKVASGLSKQTDEIINSLVGRQNISEDVPPGFSCLFQPLGSLNASLNSGDLALQNASHSDSGCPSDVVIAHPKEKFNSRLHVSYGVPWPVIQQYGTPHAETADSWVTAPGMPFNPFPPLPPDPPQKKDCQSSNATDAMKIDQPAEVVKRDTSGLGSCYSDDMIPCTTDADAGDFSYENNNYISKRLKSSPSDLGRSYFRQQKWNKSKIPRPWSRRNLWGCNESNSRGNLCSIGVVDVPEDAICKAEKDGNNI 1995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1083 1995 Gene3D SET domain 1042 1301 IPR046341 -
Dere04g1083 1995 ProSiteProfiles Zinc finger CW-type profile. 982 1036 IPR011124 GO:0008270
Dere04g1083 1995 CDD SET_SETD2 1147 1289 IPR044437 GO:0010452|GO:0046975
Dere04g1083 1995 Gene3D - 979 1041 - -
Dere04g1083 1995 FunFam Histone-lysine N-methyltransferase 1047 1303 - -
Dere04g1083 1995 MobiDBLite consensus disorder prediction 763 784 - -
Dere04g1083 1995 PANTHER SET DOMAIN PROTEINS 497 1732 - -
Dere04g1083 1995 ProSiteProfiles Post-SET domain profile. 1273 1289 IPR003616 -
Dere04g1083 1995 FunFam Histone-lysine N-methyltransferase 980 1041 - -
Dere04g1083 1995 Pfam AWS domain 1110 1145 IPR006560 GO:0005634|GO:0042054
Dere04g1083 1995 SMART shorttest3 1096 1147 IPR006560 GO:0005634|GO:0042054
Dere04g1083 1995 Pfam SET domain 1159 1265 IPR001214 GO:0005515
Dere04g1083 1995 MobiDBLite consensus disorder prediction 887 909 - -
Dere04g1083 1995 Pfam CW-type Zinc Finger 988 1034 IPR011124 GO:0008270
Dere04g1083 1995 SUPERFAMILY SET domain 1076 1286 IPR046341 -
Dere04g1083 1995 ProSiteProfiles SET domain profile. 1148 1265 IPR001214 GO:0005515
Dere04g1083 1995 MobiDBLite consensus disorder prediction 893 909 - -
Dere04g1083 1995 MobiDBLite consensus disorder prediction 277 291 - -
Dere04g1083 1995 SMART set_7 1148 1271 IPR001214 GO:0005515
Dere04g1083 1995 MobiDBLite consensus disorder prediction 471 486 - -
Dere04g1083 1995 MobiDBLite consensus disorder prediction 263 291 - -
Dere04g1083 1995 ProSiteProfiles AWS domain profile. 1096 1146 IPR006560 GO:0005634|GO:0042054
Dere04g1083 1995 MobiDBLite consensus disorder prediction 470 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1083 Dere-ChrDere04 11618497 11631706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1083 1131 1288 C2H2 Transcription Factor Family AT2G23740 33.714 1.57e-19 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere04g1083 SET 2.3e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1083 04 11618497 11631706 Dere04g1083 04 11618497 11631706 ECH