Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1081 ATGGGGAGGGGTAAGATTGAAATCAAGAGGATTGAGAACTCGAGCAACAGGCAAGTGACCTACTCAAAGAGGAAGAATGGGATCCTAAAGAAGGCAAATGAAATTACCGTTCTATGTGATGCCCAGGTTTCCCTTATTATCTTTTCTGCATCAGGAAAGATGCATAACTACATCAGCCCTTCCACCACGTTGATTGACATCCTGGAGAGGTACCGCAAAACGTCTGGGAAGACGCTCTGGGACGCCAAGCATGAGAACCTAAGCAATGAAATTGATAGACTCAAGAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAGGGGGAGGACATCACATCACTGAATTACAAGGAGCTGATGTCATTAGAGGTTGCTCTTGAAAATGGCCTCACTGGTGTCCGCGATAAACAGGGCAAGATTTTGGAGGAGGAAAATAGGGAACTTAATTTCCTGCTGCAACAGCATTTGGCAGTGGAAGGTGTGAGGGACATGGATAATGGATTTGATCAGAGCATTAGGGATTTCAATGCTCAGATGCCATTTGCCTTCCGCGTGCAGCCTCTACAGCCAAACCTTCAGGAGAGGATGTAG 597 0.4606 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKANEITVLCDAQVSLIIFSASGKMHNYISPSTTLIDILERYRKTSGKTLWDAKHENLSNEIDRLKKENDSMQIELRHLKGEDITSLNYKELMSLEVALENGLTGVRDKQGKILEEENRELNFLLQQHLAVEGVRDMDNGFDQSIRDFNAQMPFAFRVQPLQPNLQERM 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1081 198 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Dere04g1081 198 Pfam K-box region 81 151 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere04g1081 198 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere04g1081 198 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Dere04g1081 198 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Dere04g1081 198 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere04g1081 198 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere04g1081 198 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere04g1081 198 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 192 - -
Dere04g1081 198 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere04g1081 198 Coils Coil 77 111 - -
Dere04g1081 198 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere04g1081 198 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere04g1081 198 ProSiteProfiles K-box domain profile. 84 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1081 Dere-ChrDere04 11602329 11604882 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1081 1 139 MADS-box Gene Family AT5G20240 70.504 1.65e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere04g1081 K-box 3.8e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1081 04 11602329 11604882 Dere04g1081 04 11602329 11604882 ECH