Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1078 ATGCTGAGGACCAATACATTCAAAGGCGCGAATGTGTTCATGTCACGGAACCTCGTGCCGCCGGAAGTCTTCGACACACTTCACGACGCGCTCAAGAATAATGGCGCACATGTCGAGCTCTGCTGCGATCCTTCGCGGAATGGGCCTCACGATTACCACGTCATATCCCACGATCATGAGAAGCTCGAGGATCTTAAATTAAGGGGTTGTAATCTGCTTGGTCCTCAGTGTGTGCTTTCATGTGCAAAAGAACAAAAACCTCTGCCTAAACAGGGCTTCACTTGTTGCCTTGCCATGGATGGTGTCAAAGTACTTGCATCTGGCTTTGATATCGACGAGAAGGTTAAGATAGGAGAGTTAGTTACTTCAATGGGAGGAGTTCTGCATACTAAAGCATCACTGGATGTCAACTTTGTGATTGTGAAAAATGTTTTAGCTGCAAAGTACAAGTGGGCTTTGAATATGCTGAAGAAACCAATAGTCACTTTTAATTGGTTAAAGCAATGCTCTATTGAGCATCGTATTGTCCCTCAAGAGTCATACAGGGTTCTTCCTCTTTCTGGGTTGACAATTTGTGTTACCCGAATTCCAGCAGATGAGCGCAGAGAAATTGAGAAGCTCATAATACAAAATGGTGGAAAATACTCAGCAGAGCTAACAAAGAAGTGCACACATTTGATTTCTGATATATCCTTGCCATTTTTTTCTAATGGACCTGTAATGTCACAAAGAATAGCTATGGATAACTTAACAGCACAATGTAGCCAAGAAAAGGGAAATGGGAAATTGCAATCTGCAGCATCATCTAGCGCCCCTGATTCATTTGTGCCTGTTGTTTCCTGTGCTGAGTTTGTGGACAGAGATCCAGATGTTACACAGTCAGAAAACATTTCTCCTGCTGTTTTAGATGCTTCTGTCTTTGTAAATGAGACAGATCTTGAAGCTCCTCCAGTGGAATCCAAAAATGAACCAAACCTTGACAGTGCTGTTGCCAATGATTCTGAATCTGATGATAATGACCTGTACTTATCAGAGTGCAGAATTTTACTGGTTGGTTTTGAAGCTTCTGAAATGCGTAAGCTAGTTAATATGGTACGCAAAGGAGGAGGATCCCGATATATGTCTCTTAATGACAAGTTGACTCATATAGTAATTGGAACCCCTTCAGAACTGCTTGATCATTATCATTATGTCTGTTTCTCCAGAGAAAAGAAGGATGTAAGGAGTCTTGCTGCTTTGGGTGTCATCCATGTTGTTAAATCCACATGGCTTGAAGATTGTGACCGTGAAAAGAAAGAAGTCCCTGTCCTTAGGAGACACATTGCCCAAGATCTTCTTCTTCCAAAAGGTCTGCTGTTGTCATGTGCAGTTGTGTACATTTCTGTGTCTGTTGTTACCTACTTGTGTGTAAGCTGGAGAAAGCTTCTTAATAAAATTCGTTTTGTTAGATTTTCTTTTATAGTGGTCTTAAGTATGATTTTATGGAATATATACTCATTTTGTTCTGATTGCTTAAGTTCAGCATGCTTTGTGAAAGGTGCAGTAACTGGCATTACGGGCCTTAATAAAGGTAAAGTCTCCAGCACTCATCAAAGCTTGCAGGCTGATCAGGTGGTGGGTAGTATGAACTCTAGAGTTGTGATGCCATCATCTATGGAGAATAAGAAAGAAGAGAAGCTGGAGTTTGATGTGAATGCTCAAACATTTGTTAAATCAATGGGCAACTCTGCACAGCAAACTCAACTTCCTGTTAATAATAACATGAAGGGTCAACAGAAGATGCAAAATATCTCTACTTCTCAGTGCGTGAAGTCATCAACTGTTTTTAGAGGGAGGATATTTTGTTTTTCAAGTTCTTTTCCTGAAGAGAGAAGGGATGAGATTATTCAATGGATAAGTCAAGGAGGAGGAGAGGTAGTTAATGGGCATAGAAAACAGAATGCCCACTATACTATTGAGTGTCATGGTGTAACAAAGTTGGAAGATATTTCCCAAACTAGGCATGTTTCCAGTCATTGGATACGATCTTGTTTAGAGGATGACTCCTTGCTGGATGTTGATAGTCACATTCTTTATTCTCCACTTCCTTGCGGAGTACCCTTGCCTGGGTTCAAAAGCTTTCGGTTTTGTGTTTCACAATATGAGGAGAAAGACAGAATTTTACTTAGGAACTTGTGTTTTGTTCTTGGAGCTAAATTTGTGGAGAAGTTGACAAAGAAAGTCACCCATTTATTGTGTAAATTCAACAATGGACCCAAGTATGAGGCTGCCTGTAAGTGGGGGATCCAGTCAGTTACCTCTGAATGGATATTTGAATGTGTCAAACAGAATAAAGTTGTTGCTCTTGATCAATTTTTACCAAAAGAAGTCAGTGCTCAAGACCAAGAAGCAGGAATATTTCCTGTGAGTCAATTTTCTACCCAGGCTGTTCGAAAGATAAGTGGAGACAGCTCCTCCCAGTTTTCAAGTCGATCCCAAAATTTGAGAATCGCACCAAATCAGAACGTAGGTAGTCAAGTCGACAATTATGGGGTTGATGATAAAAGATCAAGTGTTAACTGCAAAAAGGCAAGGCTTTTGGAAGAGCCTGGCCAGTATGATATGGTGCCTTCTCCTGTAGCTTCAGTAACCCGTGTCTATGACATGAATTCTGCTGGAGACAATATGCTCAAAATTAGTGGTGAGGTTTCTCAAGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACCAGTAAGATGCATGATCAAAAGTCCCCAGGGAAGACACTTATGATTTTCTTCAGGAGTAGCAGAAACGAGGATAACGATGATTCTTCTCGAGATGGAAGAGCAGCTTATGATAATTTTAGTGAAACACAAACAGATTCTCAGGTTGTTGGTTATGAAGAAGATTTGTCAGGAAGGCAAATGCTTATCGACAGAAAAAAGATCAACCCTGCTAAGGGTCAGCAAGTGGAGGAAAAGGAAGCAGCTGTCAGTACTAGAATGATAATATCAGCTATGTATACCTATATGTTTCGATCAAGTTCAGATTTTGATTGA 3054 0.407 MLRTNTFKGANVFMSRNLVPPEVFDTLHDALKNNGAHVELCCDPSRNGPHDYHVISHDHEKLEDLKLRGCNLLGPQCVLSCAKEQKPLPKQGFTCCLAMDGVKVLASGFDIDEKVKIGELVTSMGGVLHTKASLDVNFVIVKNVLAAKYKWALNMLKKPIVTFNWLKQCSIEHRIVPQESYRVLPLSGLTICVTRIPADERREIEKLIIQNGGKYSAELTKKCTHLISDISLPFFSNGPVMSQRIAMDNLTAQCSQEKGNGKLQSAASSSAPDSFVPVVSCAEFVDRDPDVTQSENISPAVLDASVFVNETDLEAPPVESKNEPNLDSAVANDSESDDNDLYLSECRILLVGFEASEMRKLVNMVRKGGGSRYMSLNDKLTHIVIGTPSELLDHYHYVCFSREKKDVRSLAALGVIHVVKSTWLEDCDREKKEVPVLRRHIAQDLLLPKGLLLSCAVVYISVSVVTYLCVSWRKLLNKIRFVRFSFIVVLSMILWNIYSFCSDCLSSACFVKGAVTGITGLNKGKVSSTHQSLQADQVVGSMNSRVVMPSSMENKKEEKLEFDVNAQTFVKSMGNSAQQTQLPVNNNMKGQQKMQNISTSQCVKSSTVFRGRIFCFSSSFPEERRDEIIQWISQGGGEVVNGHRKQNAHYTIECHGVTKLEDISQTRHVSSHWIRSCLEDDSLLDVDSHILYSPLPCGVPLPGFKSFRFCVSQYEEKDRILLRNLCFVLGAKFVEKLTKKVTHLLCKFNNGPKYEAACKWGIQSVTSEWIFECVKQNKVVALDQFLPKEVSAQDQEAGIFPVSQFSTQAVRKISGDSSSQFSSRSQNLRIAPNQNVGSQVDNYGVDDKRSSVNCKKARLLEEPGQYDMVPSPVASVTRVYDMNSAGDNMLKISGEVSQAVPDVAAAIEDLLEQTSKMHDQKSPGKTLMIFFRSSRNEDNDDSSRDGRAAYDNFSETQTDSQVVGYEEDLSGRQMLIDRKKINPAKGQQVEEKEAAVSTRMIISAMYTYMFRSSSDFD 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1078 1017 CDD BRCT_TopBP1_rpt2_like 185 229 - -
Dere04g1078 1017 SUPERFAMILY BRCT domain 338 435 IPR036420 -
Dere04g1078 1017 SUPERFAMILY BRCT domain 700 788 IPR036420 -
Dere04g1078 1017 ProSiteProfiles BRCT domain profile. 338 441 IPR001357 -
Dere04g1078 1017 CDD BRCT 102 169 - -
Dere04g1078 1017 Pfam BRCA1 C Terminus (BRCT) domain 340 427 IPR001357 -
Dere04g1078 1017 ProSiteProfiles BRCT domain profile. 99 183 IPR001357 -
Dere04g1078 1017 Gene3D BRCT domain 699 792 IPR036420 -
Dere04g1078 1017 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 267 925 - -
Dere04g1078 1017 SMART BRCT_7 340 431 IPR001357 -
Dere04g1078 1017 SMART BRCT_7 701 777 IPR001357 -
Dere04g1078 1017 SMART BRCT_7 96 173 IPR001357 -
Dere04g1078 1017 SMART BRCT_7 606 681 IPR001357 -
Dere04g1078 1017 SMART BRCT_7 183 257 IPR001357 -
Dere04g1078 1017 SUPERFAMILY BRCT domain 606 693 IPR036420 -
Dere04g1078 1017 FunFam Transcription coactivator 96 184 - -
Dere04g1078 1017 Gene3D BRCT domain 96 184 IPR036420 -
Dere04g1078 1017 ProSiteProfiles BRCT domain profile. 604 691 IPR001357 -
Dere04g1078 1017 FunFam Transcription coactivator 601 697 - -
Dere04g1078 1017 ProSiteProfiles BRCT domain profile. 704 787 IPR001357 -
Dere04g1078 1017 MobiDBLite consensus disorder prediction 314 337 - -
Dere04g1078 1017 CDD BRCT_TopBP1_rpt2_like 702 777 - -
Dere04g1078 1017 ProSiteProfiles BRCT domain profile. 181 229 IPR001357 -
Dere04g1078 1017 Gene3D BRCT domain 601 697 IPR036420 -
Dere04g1078 1017 Pfam twin BRCT domain 189 229 IPR001357 -
Dere04g1078 1017 Pfam twin BRCT domain 103 165 IPR001357 -
Dere04g1078 1017 Pfam twin BRCT domain 708 769 IPR001357 -
Dere04g1078 1017 Pfam BRCT domain, a BRCA1 C-terminus domain 606 688 IPR001357 -
Dere04g1078 1017 Gene3D BRCT domain 321 438 IPR036420 -
Dere04g1078 1017 Gene3D BRCT domain 41 93 IPR036420 -
Dere04g1078 1017 Gene3D BRCT domain 185 236 IPR036420 -
Dere04g1078 1017 SUPERFAMILY BRCT domain 58 183 IPR036420 -
Dere04g1078 1017 FunFam Transcription coactivator 320 441 - -
Dere04g1078 1017 SUPERFAMILY BRCT domain 185 230 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1078 507 978 Core DNA Replication Machinery Family AT1G77320 41.373 3.04e-102 342