Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1072 ATGGCTAAGCCCTTCATCTTCCTTTCTCTTCTCGTCTCTCTCGTCTTCACCATCTCCCTTGCTGCTTCACCCTCTTCTTCTTCTTCTTCTTCTTCTTCATGCCCCTTTGATCTCAATTACGTCTCAACCTTCCCCTGGGACACTTCAACTTGCCTTCAAGTTGACCCAAATAATGGAACCCAACACTGCTGTCAAACGCTCCTCAGCCTCTTCGGTATGGGACTTGCTCAACACCTCAAAGACACCTCCATATTCGAACTTCCCGATTCGAACTCTTCCTCTTCTTGCCTCTCCGTTTTCGGAACCAAGCTTGCAGCTTTATCAATCCAACCCAGTTTGGTCTCTTCTTGCTTCCGTAACTCCACCCAGTTCGTTACCAATTCCTCCAGCTGCGCAGGGATTAAAACCATACAAGATTTTAATTCGAAGGTAGGCATGATGACCCCTTTAGATACATCCTGTAATGGTGACCTCACGGGGCTAACTCGGTGTGGTATTTGCCTGGATGCTGGCTTGAAGGTCACTTCCCAATTGACTGCTCTTGACCCAAATGCCACTAAATGTTTTTACTTCACAATCTTATATGCTGCTGCTATTGTTAACCAGTTTGGTCCTAAAGATGTTAGAACAGCTAGCTGCATACTAGGCATGCCTCTGTCTGGTGCTGCAGCAAAAGGGTCGTCTAACAAAGAACGCGCTCTGAAGCTGAGTTTTGGGTTATTGGGTGCTCTTATTGGTGTTCTTCTTGCTTTTCTTCTGATTTTTATCTATAGGAAGTGGGATAAGAGAAGGAGGGAAAATATTTATCACAGAGAAGTTGTGAGCAGTGTGAGGGCCAGTGTTTTGCCCTACACAGGTGCGAAATGGTTTCATTTGTCAGAGCTTGAAAAAGCCACTGATAAATTCTCGGGGAGGAATCTGATTGGTCAAGGATCTGATGGGGTTGTGTACAAAGGAACTCTTCATGATGGCACTTTGGTTGCAGTCAAAGAGATTTTCGATCTGGAAACCAAAGGGGATGAAGAGTTTTGCTATGAAGTAGAGATCATAAGCAAAATAAAGCACAGGAATCTCGTTGCTCTTCGAGGTTGTTGTGTTACAAGTGATAACTCGAAAGGTAAAAGGAGGTTTTTGGTTTATGATTACATGCCTAATGGCAGCCTAAGTTACCAATTATCTCTTTCTGGAGCTAACAAGCTAACATGGCCGCGAAGAAAGAACATAATTCTCGATGTGGCTAAAGGGCTTGCCTATTTGCATTACGAAATCAAACCCCCAATTTATCATCGAGACATAAAGGCCACCAACATACTTCTAGACTCCACAATGAAAGCCAAAGTAGCAGATTTTGGATTAGCCAAGCAAGGCAATGAAGGCCAGTCTCATCTCACCACAAGGGTTGCTGGCACATATGGTTATTTAGCACCAGAGTATGCTCTTTACGGCCAACTAACGGAGAAAAGTGATGTTTATAGCTTTGGCATTGTGATTCTTGAAGTCATGAGCGGAAGAAAAGTGCTTGACACTTCAAACTCATCAGTTCTTCTGATCACAGATTGGGCATGGACGCTTGCAAAATCAGGGAAGATAGAAGAAATTTTAGATGAGTCAATAAGAGAAGGAGGGCCAAAAAGGATAATGGAAAGGTTTGTTCTTGTTGGGATTTTGTGTGCTCATGTGATGGTGGCTTTGAGGCCTACTATTTCTGAAGCCCTCAAGATGTTGGAAGGAGACATTGACATTCCCAATTTACCAGACAGGCCAGTTCCTCTTGGTCACGAGTCCTTTCAATCTTCTCTCATGTATGGTTTACAAAGAAGTGGAAGATCTACACCGTTCAGTTCATCTTTTCAAGTTTCAGCACATGACAGATTGGACCAGAATTAG 1887 0.4356 MAKPFIFLSLLVSLVFTISLAASPSSSSSSSSSCPFDLNYVSTFPWDTSTCLQVDPNNGTQHCCQTLLSLFGMGLAQHLKDTSIFELPDSNSSSSCLSVFGTKLAALSIQPSLVSSCFRNSTQFVTNSSSCAGIKTIQDFNSKVGMMTPLDTSCNGDLTGLTRCGICLDAGLKVTSQLTALDPNATKCFYFTILYAAAIVNQFGPKDVRTASCILGMPLSGAAAKGSSNKERALKLSFGLLGALIGVLLAFLLIFIYRKWDKRRRENIYHREVVSSVRASVLPYTGAKWFHLSELEKATDKFSGRNLIGQGSDGVVYKGTLHDGTLVAVKEIFDLETKGDEEFCYEVEIISKIKHRNLVALRGCCVTSDNSKGKRRFLVYDYMPNGSLSYQLSLSGANKLTWPRRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSTMKAKVADFGLAKQGNEGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEVMSGRKVLDTSNSSVLLITDWAWTLAKSGKIEEILDESIREGGPKRIMERFVLVGILCAHVMVALRPTISEALKMLEGDIDIPNLPDRPVPLGHESFQSSLMYGLQRSGRSTPFSSSFQVSAHDRLDQN 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1072 628 Gene3D Phosphorylase Kinase; domain 1 264 382 - -
Dere04g1072 628 MobiDBLite consensus disorder prediction 607 628 - -
Dere04g1072 628 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 383 583 - -
Dere04g1072 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Dere04g1072 628 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Dere04g1072 628 Gene3D Transferase(Phosphotransferase) domain 1 383 581 - -
Dere04g1072 628 PANTHER OS01G0750732 PROTEIN 48 586 - -
Dere04g1072 628 CDD STKc_IRAK 308 577 - -
Dere04g1072 628 ProSiteProfiles Protein kinase domain profile. 302 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1072 628 SMART serkin_6 302 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1072 628 Pfam Protein kinase domain 306 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1072 628 SUPERFAMILY Protein kinase-like (PK-like) 286 595 IPR011009 -
Dere04g1072 628 Pfam SPARK 29 188 IPR043891 -
Dere04g1072 628 FunFam Receptor-like serine/threonine-protein kinase At4g25390 267 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1072 Dere-ChrDere04 11480828 11482714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1072 27 597 Receptor kinase-like Gene Family AT1G11050 53.663 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Dere04g1072 Pkinase 2.6e-44 CL0016