Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1067 ATGCTTCTTTGTGTCCTGACTAGTATCAAAAGTCAAAACCCATCTCGTCATTTTCCTGTGCTCTGCAATTCTCAACTTTCAATCGTACGTGATCAAGATTGTAAACCATTGAAGCTTAGATTTCCACATTTCTTGACTCCGCTTCTCCTCTTTGCTTTTTCCGCAGTTTGCGTGATGAGTTTCCTGAGGCCCTCTGCGTTGTACGGCTTTCTTATTTCTTACCCTTCCCTCCGATGGATGCCTTGTCAGAGCTGGGGCTTTCTTCGATGGCCCGGCCTTGATGGCTTCTTGAGACTTTTGGTGGTGCTCCTTCTCTGGTCTATGTTTTCTGAGCTTCGCTACATACCGTCATCTTCTATGTACCCTACTCTTGCTGTTGGCGATCGAATAATTGTCGAGAAGGCTTCATATTACATCAGGAGTCCTGCTTTACATGATATTGTAACATTCCGAGATCCAACACAGCTATCTGGAGGCAAGGCAGCAGATGTATTTATTAAAAGAATTGTTGCAAAAGCAGGAGACTTTGTTGAGGTTCATCGTGGACATCTCTACATCAACGGTGTAGCTCAAAGGGAAGATTACATAGCTGAGCGGCCAACATATACAACGAACTTAACCTATGTACCAAAAGGCCATGTTTATGTGTTAGGCGACAATCGTAACAACAGTTATGATTCTCATGTTTGGGGACCACTTCCTGTCAAAAACATAGTTGGAAGATACGTCATATGTTGTCACAGACCCACAAACATTTGA 759 0.4335 MLLCVLTSIKSQNPSRHFPVLCNSQLSIVRDQDCKPLKLRFPHFLTPLLLFAFSAVCVMSFLRPSALYGFLISYPSLRWMPCQSWGFLRWPGLDGFLRLLVVLLLWSMFSELRYIPSSSMYPTLAVGDRIIVEKASYYIRSPALHDIVTFRDPTQLSGGKAADVFIKRIVAKAGDFVEVHRGHLYINGVAQREDYIAERPTYTTNLTYVPKGHVYVLGDNRNNSYDSHVWGPLPVKNIVGRYVICCHRPTNI 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1067 252 ProSitePatterns Signal peptidases I signature 3. 214 227 IPR019758 GO:0004252|GO:0016020
Dere04g1067 252 FunFam Peptidase/ serine-type peptidase 117 246 - -
Dere04g1067 252 Gene3D Umud Fragment, subunit A 117 249 - -
Dere04g1067 252 Pfam Signal peptidase, peptidase S26 96 244 IPR019533 GO:0004252|GO:0006465
Dere04g1067 252 CDD S26_SPase_I 111 241 IPR019533 GO:0004252|GO:0006465
Dere04g1067 252 PANTHER SIGNAL PEPTIDASE I 95 249 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere04g1067 252 ProSitePatterns Signal peptidases I serine active site. 117 124 IPR019756 GO:0004252|GO:0016020
Dere04g1067 252 NCBIfam signal peptidase I 98 245 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere04g1067 252 SUPERFAMILY LexA/Signal peptidase 108 244 IPR036286 -
Dere04g1067 252 PRINTS Bacterial leader peptidase 1 (S26A) family signature 209 228 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere04g1067 252 PRINTS Bacterial leader peptidase 1 (S26A) family signature 108 124 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere04g1067 252 PRINTS Bacterial leader peptidase 1 (S26A) family signature 165 177 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1067 Dere-ChrDere04 11430812 11437351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1067 120 241 MADS-box Gene Family AT1G29960 30.894 3.69e-08 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1067 04 11430812 11437351 Dere04g1067 04 11430812 11437351 ECH