Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1066 ATGTCAACCCAGAATCGTCGTCCATCGTTTTCCTCCTCGACGACGTCGTCATTGGCAAAGCGGCATGCTTCATCGTCGGAGAATGTGCGGAAGGCTATGGCAGCCCCTCCACACATGGCCAAGAAGCGAGCGCCTCTCAGTAACCTGACCAATCAAAAGAATGCGTCTCATAGTGCTTTGCGGAACTCAATGCCATCAACTACTTCGGTACCATTCGCAGCTAAAAATGCCAAGACAAAGAAGAATTTCTCGGCATGCACCACTAGCTCAGCAAATTCTGGGAACAAATTACCTGCTTTGTCGATTGTTAAATCCAGTGCAGTTGATTTCCCTAAGGCCTCTTCTTTTCCACCGAGGGATGAAACTGCTCCCGCTACTGTCACTCTTCCAAGTAAAATGGATACTTCTCCTATTAAATCAGATGGGATGTCAGTTTCTTTGGATGAGACAATGTCTACCTGTGATTCTTTCAAGAGTCCTGAAATTGAATACATTGATAACAGCGATGTTTCAGCTGTTGATTCTATTGACAGAAAAACATTCAGCAATCTGAACATCTCTGATAATACAGAGCCAGCAGGAAGCGTTTGTAGTAGAGACACACTCGTTGATTTGGAAAGAGATGACAAAATTGTCAATATCGACAACAATTACACGGATCCCCAGCTTTGTGCAATTTTTGCTTGTGATATCTATAAGCATTTGCGTGCATCTGAGGCAAAGAAAAGGCCTTCCACAGACTTCATGGAGAGAATTCAGAAGGACATAAATTCCAACATGCGTGCTATATTAATTGATTGGCTTGTGGAGGTGGCTGAAGAGTATCGGCTAGTACCTGATACATTGTATTTGACAGTGAACTACATAGATCGGTATCTCTCGGGGAATGTGATGAGTAGGCAAAAGTTACAATTACTTGGTGTTGCCTGTATGATGATAGCCTCTAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAGTACTGTTACATAACTGATAACACATACTTCAAAGAAGAGGTTTTGCAAATGGAATCTGCTGTCTTAAATTATCTGAAATTTGAAATGACATCCCCAACAACTAAATGTTTCTTAAGACGATTTGTTCGAGCAGCTCAAGGAGTTAACGAGGTGCCATCATTGCAATTAGAGTGCTTGACCAATTATATTGCCGAATTGTCTCTACTGGAGTACAGTATGCTATGTTATGCCCCATCACTCATAGCTGCTTCTGCAATTTTCCTGGCCAAATTTATGCTTTTTCCTTCAATAAGACCATGGAATTCCACATTGCAGCATTACACACTGTATCAGGCTTCTGATTTGAGTGACTGTGTAAAGGATCTCCATCGTCTGTGCTTTAATAGCCATAATTCTAACTTACCTGCAATCCGAGAGAAATACAGTCAGCACAAGTATAAATATGTGGCAAAGAAGTTCTGTCCTTCATCAATACCACAAGAATTTTTCCAAAATTGA 1479 0.4151 MSTQNRRPSFSSSTTSSLAKRHASSSENVRKAMAAPPHMAKKRAPLSNLTNQKNASHSALRNSMPSTTSVPFAAKNAKTKKNFSACTTSSANSGNKLPALSIVKSSAVDFPKASSFPPRDETAPATVTLPSKMDTSPIKSDGMSVSLDETMSTCDSFKSPEIEYIDNSDVSAVDSIDRKTFSNLNISDNTEPAGSVCSRDTLVDLERDDKIVNIDNNYTDPQLCAIFACDIYKHLRASEAKKRPSTDFMERIQKDINSNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNVMSRQKLQLLGVACMMIASKYEEICAPQVEEYCYITDNTYFKEEVLQMESAVLNYLKFEMTSPTTKCFLRRFVRAAQGVNEVPSLQLECLTNYIAELSLLEYSMLCYAPSLIAASAIFLAKFMLFPSIRPWNSTLQHYTLYQASDLSDCVKDLHRLCFNSHNSNLPAIREKYSQHKYKYVAKKFCPSSIPQEFFQN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1066 492 PANTHER CYCLINS 174 470 IPR039361 -
Dere04g1066 492 Pfam Cyclin, C-terminal domain 359 478 IPR004367 -
Dere04g1066 492 CDD CYCLIN_AtCycA_like_rpt1 220 355 - -
Dere04g1066 492 SUPERFAMILY Cyclin-like 219 356 IPR036915 -
Dere04g1066 492 FunFam Cyclin A1 346 478 - -
Dere04g1066 492 MobiDBLite consensus disorder prediction 113 139 - -
Dere04g1066 492 SUPERFAMILY Cyclin-like 359 484 IPR036915 -
Dere04g1066 492 SMART Cyclin_C_2 359 482 IPR004367 -
Dere04g1066 492 FunFam Mitotic cyclin 6 244 344 - -
Dere04g1066 492 Gene3D - 244 357 - -
Dere04g1066 492 SMART cyclin_7 363 451 IPR013763 -
Dere04g1066 492 SMART cyclin_7 266 350 IPR013763 -
Dere04g1066 492 Pfam Cyclin, N-terminal domain 230 356 IPR006671 -
Dere04g1066 492 PIRSF Cyclin_A_B_D_E 1 489 IPR046965 GO:0016538|GO:0044772
Dere04g1066 492 CDD CYCLIN_AtCycA-like_rpt2 359 473 - -
Dere04g1066 492 MobiDBLite consensus disorder prediction 1 23 - -
Dere04g1066 492 MobiDBLite consensus disorder prediction 45 67 - -
Dere04g1066 492 ProSitePatterns Cyclins signature. 261 292 IPR006671 -
Dere04g1066 492 MobiDBLite consensus disorder prediction 1 67 - -
Dere04g1066 492 Gene3D - 230 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1066 Dere-ChrDere04 11399328 11402847 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1066 4 492 Core Cell Cycle Gene Families AT1G44110 66.463 0.0 619