Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1065 ATGTTCAGCCGAAATCTGCATGGGTCGTCCCCTTCGTCATCTGAAAAGAAGAGGACGTCAGTTTCGGAGAATCTTAGCCAGAAGGTTACGGCCATGAAACACCATTTGACAAAGAAGCGCCCTGTTCTCGGGGACGTAACCAATCAAAGAAATGCCTCTCTCATTGGTATAAGGACCTCTACTGCTGCTCCATCCAAGCCTACGATGACTGATATTATTATTATACTTCATTTAAAGGTTCCATGTGTATCTAAAACTGCCAAGACAAAGAAGGATTCTATTTCCAGCTCTCAGAAAAAGGATACATCTAGGGAAACTTTGCAACCCTCAATGACTGTGAAATCAAGTGATTTGTTTCTTCCTAAAGACACATCTTCAACCAGAAGTAGTCAGTTAGAGGCAGGGGCTGAAGTCCTCCATGATTCAAGCATTGTTAGTACTGTTTGTCCATGTCCTGCTTTTAGTAGTATGGTCTGTGCCTCCAGAATGTACATTTCACCTAGTAGATGCTTTAGTGGCTCAGTTTCATTGGATGAATGCATTTCAAGCTGTGATTCTTTGAAGAGTCCAGAATTTGAGTATATTGACAATGAGGATACCGTATCAGTTAAATCAATTGAGACAAAGACAAGTAGCATTCTTAATATTTCAGAGTATTCAAAAATAGCAGGGAGAATACATGATAGTGAAGTTGTAGATATTGACAAAGATTTCAAGGACCCACAAGTTTGTGCATCTGTTGCACATGAAATCTATGAATATTTGCGTGTATCTGAGGAAAGTAAAAGGCCATCCATGGACTTCATGGAGATGATACAGAAAGATGTTGATTCTAGCATGCGGGCAATACTTATTGACTGGCTTGTGGAGGTTGCTGAAGAGTACACGCTTCGACCTGATACATTATATTTGGCAGTGAATTACCTGGACCGTTATCTTTCTGGAAATACAATAAATAGGAAGCAATTGCAATTGCTTGGTGTTACTTGCATGATGATTGCTGCCAAATATGAGGAGATTTGTGCCCCCAAGGCAGAAGAATTCTGTTATGTAACTGATCATACATATTCTATAAATCAGGTGTTGCAGATGGAATCTGATGTGCTGAGGTTCTTGAAGTTTGAAATGACAGTTCCAACAGTTAGATGTTTTTTGAGGCGCTTCATTATTGTTGCCCAACAAACCTGTGAGGTTCCAAAGATGCAGTTGGAGTATTTAGCGGACTATCTTGCAGAGTTATCTCTTCTAGAGTATAGCATGCTTCAGTACACCCCATCATTAATTGCTGCATCAGCCACTTTCTTGGCTCATTTCATTTTACTCCCTAGGAAGAAACCTTGGAATTCTACACTAAGGCATTACACAAGTTACCAAGCATCGGAACTGTGTGATTGTGTCAAGGCATTGCATTGGTTGTGTTGTTGCGGAAGTTATAATTTGCCTGCCATTCGGGAGAAATATAGTCAGCATAAGTTCAAGTTCGTGGCGAAGAAGTACTGTCCTCCATCAATACCCCTTGAGCTTTTCAAATACTAA 1536 0.403 MFSRNLHGSSPSSSEKKRTSVSENLSQKVTAMKHHLTKKRPVLGDVTNQRNASLIGIRTSTAAPSKPTMTDIIIILHLKVPCVSKTAKTKKDSISSSQKKDTSRETLQPSMTVKSSDLFLPKDTSSTRSSQLEAGAEVLHDSSIVSTVCPCPAFSSMVCASRMYISPSRCFSGSVSLDECISSCDSLKSPEFEYIDNEDTVSVKSIETKTSSILNISEYSKIAGRIHDSEVVDIDKDFKDPQVCASVAHEIYEYLRVSEESKRPSMDFMEMIQKDVDSSMRAILIDWLVEVAEEYTLRPDTLYLAVNYLDRYLSGNTINRKQLQLLGVTCMMIAAKYEEICAPKAEEFCYVTDHTYSINQVLQMESDVLRFLKFEMTVPTVRCFLRRFIIVAQQTCEVPKMQLEYLADYLAELSLLEYSMLQYTPSLIAASATFLAHFILLPRKKPWNSTLRHYTSYQASELCDCVKALHWLCCCGSYNLPAIREKYSQHKFKFVAKKYCPPSIPLELFKY 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1065 511 PANTHER CYCLINS 199 493 IPR039361 -
Dere04g1065 511 ProSitePatterns Cyclins signature. 281 312 IPR006671 -
Dere04g1065 511 MobiDBLite consensus disorder prediction 89 125 - -
Dere04g1065 511 SMART cyclin_7 383 471 IPR013763 -
Dere04g1065 511 SMART cyclin_7 286 370 IPR013763 -
Dere04g1065 511 CDD CYCLIN_AtCycA-like_rpt2 379 492 - -
Dere04g1065 511 MobiDBLite consensus disorder prediction 100 125 - -
Dere04g1065 511 FunFam Mitotic cyclin 6 264 364 - -
Dere04g1065 511 MobiDBLite consensus disorder prediction 1 24 - -
Dere04g1065 511 SUPERFAMILY Cyclin-like 239 376 IPR036915 -
Dere04g1065 511 FunFam Cyclin A1 366 497 - -
Dere04g1065 511 Gene3D - 264 377 - -
Dere04g1065 511 SUPERFAMILY Cyclin-like 378 503 IPR036915 -
Dere04g1065 511 Pfam Cyclin, N-terminal domain 250 376 IPR006671 -
Dere04g1065 511 Pfam Cyclin, C-terminal domain 379 497 IPR004367 -
Dere04g1065 511 SMART Cyclin_C_2 379 501 IPR004367 -
Dere04g1065 511 Gene3D - 250 497 - -
Dere04g1065 511 PIRSF Cyclin_A_B_D_E 1 165 IPR046965 GO:0016538|GO:0044772
Dere04g1065 511 PIRSF Cyclin_A_B_D_E 178 507 IPR046965 GO:0016538|GO:0044772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1065 Dere-ChrDere04 11389673 11393267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1065 107 510 Core Cell Cycle Gene Families AT1G44110 53.864 1.92e-152 441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1065 04 11389673 11393267 Dere04g1065 04 11389673 11393267 ECH