Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1058 ATGGGGCCAGAAGAGGGCAAACAATCTTGCCACAAAACCCCATACACTGAACTTGAGCAAGTTAACTCTGATTTCGTCCTGGCAATAAGTTTGCAAGAGCAAGAGACAAACCTCACAATGCTTGCAACGATTGATAGCGATGAGAGCGGTGAAGAAGATGAAAGTGAGTCCTCTTTTGATAACGATGATGATGGAGATGCTGACTTTTCCGAAAGCCAAGGTTTCGAAACAGCTGACCTTCAGTTTCCTGAGGGTGAAGGAAGCAATGATGAAGCAATGGAAGAAGATGAGATTGATCCAGATGAAATGTCTTATGAAGAGTTGATTGAATTGGGGGAGATTATAGGAGAAGAGAAAAGAGGATTATCAGCGAATGAAATTTCTTCCTGCTTGCATGCTTACACTTACCATTTTGCTGAAAACGAAGCTGGAATAGATCGCTGCGTGATATGTCAAGTTGAATATGAAAATGATGAAGCACTGATGGCACTTCAATGTGAGCACCCTTATCATACAGATTGCATTGGCAAGTGGCTTCAGATTAAGAAGGTTTGCCCAATTTGTAGCACTGAAGTTGCAACTCCAAAGCAGGCTAAGAACCCTTAA 606 0.4208 MGPEEGKQSCHKTPYTELEQVNSDFVLAISLQEQETNLTMLATIDSDESGEEDESESSFDNDDDGDADFSESQGFETADLQFPEGEGSNDEAMEEDEIDPDEMSYEELIELGEIIGEEKRGLSANEISSCLHAYTYHFAENEAGIDRCVICQVEYENDEALMALQCEHPYHTDCIGKWLQIKKVCPICSTEVATPKQAKNP 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1058 201 SUPERFAMILY RING/U-box 147 195 - -
Dere04g1058 201 MobiDBLite consensus disorder prediction 46 70 - -
Dere04g1058 201 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 6 78 IPR043312 -
Dere04g1058 201 ProSiteProfiles Zinc finger RING-type profile. 148 189 IPR001841 -
Dere04g1058 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 198 IPR013083 -
Dere04g1058 201 Pfam Ring finger domain 147 188 IPR001841 -
Dere04g1058 201 SMART ring_2 148 188 IPR001841 -
Dere04g1058 201 MobiDBLite consensus disorder prediction 39 99 - -
Dere04g1058 201 FunFam E3 ubiquitin ligase BIG BROTHER-related 114 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1058 Dere-ChrDere04 11329138 11329743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1058 95 192 C3H Transcription Factor Family AT3G63530 50.495 1.18e-29 108