Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1054 ATGGCGGAGACAATCTCTCCCATGCTCATTGACGACGACAATCACGAATCTGCCGGACGTGACAAGGGCAAAGGCTTGATCGTTGCCGGCAATCCACCCGACCGCAAGGACACTCCGTGGGTTGAAAAGTACCGCCCTAAGTCCCTCGGCGACGTCGCCGCTCATCGCGACATTGTTGATACCATTGATAGGCTGACCACTGAGAACAGATTGCCCCATCTCCTATTGTACGGCCCCCCTGGCACGGGCAAAACATCAACTATTCTTGCTATGGCCCGCAAACTATATGGAGCACAATACCACAATATGATTTTGGAGCTCAATGCATCAGATGATAGGGGAATTGATATTGTGCGGCAACAGATACAAGATTTTGCTAGCACTCAGAGCTTCTCGTTTGGAGTCAAGTCTTCTGTGAAGTTAATCTTGTTAGATGAGGCTGATGCAATGACAAAGGATGCACAATTTGCATTGCGTAGAGTGATTGAAAAATATACAAAAAATACTAGGTTTGCACTTATCTGTAACCATGTAAACAAGATTATTCCAGCACTGCAATCAAGATGTACTCGGTTTCGATTTGCCCCTCTTGATGCCGTCCACATCACTGAGAGACTAAATCATGTTATTAAGGTTGAAGGGCTCAATGTTACAGACAGCGGCTTAGCAGCACTTGTTAGGCTTAGCAGTGGTGATATGAGAAAGGCTTTGAACATTCTGCAGTCAACGCATATGGCTTCTGAGCAGATAACAGAAGAAGCTGTTTATCTATGTACTGGAAACCCATTACCAAAAGACATTGAGCAGATATCTTATTGGCTTCTCAATGAACAATTTGCAGATAGTTTTAAAAAAATATATGAAATCAAGACAAGAAAAGGATTGGCTCTGGTGGATATTGTGAGAGAAGTGACAATGTTTGTTTTTAAGATTAAGATGCCTCCAGGTGTTCGAGTACAGTTGATGAACGATTTGGCTGACATAGAGTACAGATTGAGTTTTGGGTGCAATGCTAAGCTCCAGCTGGGGTCGGTTATTGCTTCTTTCACACGCGCTAGATCTGCACTAATTGCAGCTGCTAATTAA 1086 0.4374 MAETISPMLIDDDNHESAGRDKGKGLIVAGNPPDRKDTPWVEKYRPKSLGDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAMARKLYGAQYHNMILELNASDDRGIDIVRQQIQDFASTQSFSFGVKSSVKLILLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHITERLNHVIKVEGLNVTDSGLAALVRLSSGDMRKALNILQSTHMASEQITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFKKIYEIKTRKGLALVDIVREVTMFVFKIKMPPGVRVQLMNDLADIEYRLSFGCNAKLQLGSVIASFTRARSALIAAAN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1054 361 Gene3D - 33 196 IPR027417 -
Dere04g1054 361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 255 IPR027417 -
Dere04g1054 361 CDD AAA 50 196 - -
Dere04g1054 361 Pfam Replication factor C C-terminal domain 262 348 IPR013748 -
Dere04g1054 361 SMART AAA_5 70 200 IPR003593 GO:0016887
Dere04g1054 361 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 39 343 - -
Dere04g1054 361 Gene3D - 262 359 - -
Dere04g1054 361 MobiDBLite consensus disorder prediction 1 39 - -
Dere04g1054 361 Gene3D - 200 261 - -
Dere04g1054 361 FunFam Replication factor C subunit 5 262 359 - -
Dere04g1054 361 Pfam ATPase family associated with various cellular activities (AAA) 74 194 IPR003959 GO:0005524|GO:0016887
Dere04g1054 361 FunFam Replication factor C subunit 5 32 197 - -
Dere04g1054 361 CDD HLD_clamp_RFC 197 259 - -
Dere04g1054 361 FunFam Replication factor C subunit 5 199 261 - -
Dere04g1054 361 SUPERFAMILY post-AAA+ oligomerization domain-like 262 352 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1054 Dere-ChrDere04 11311523 11316919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1054 1 360 Core DNA Replication Machinery Family AT1G77470 75.881 0.0 570