Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1015 ATGGTCAAGAGAGAGCAAAAGATCCACACAGAGGCATCAAAGCCAATGCAATCTCTGTCTTCAACAGTATCATCAGATGGGAAAAAAAAGTACAAGGGAGTGAGAATGAGGAGCTGGGGATCATGGGTTTCAGAGATTAGAGCACCAAACCAGAAAACAAGAATATGGTTAGGGTCTTATTCTACCGCAGAGGCCGCAGCCAGAGCCTATGATGCTGCACTTCTATGCCTTAAAGGCTCCTCGGCTAATCTCAATTTTCCTTCAAGTTCTTTAAACTACATTCCTCAAGATACTGTCATGTCTCCTAAATCAATCCAAAGAGTGGCTGCAGCAGCTGCTAACAGTTATGTTGACAATCCCACTACCCCACCTTCTCCTCCTCCTGCCTCGGCCTCAACCTCATCGTCCTCACTTGTCTCGTCCCCATCAATGTCCTCTGATCAAATCGACGATGATATCTCACTACGCTCGTCATTTGGGAGCTACAATTGTTGTGATCAGACAAATGGACTGGTCTCTTTGATGGACTCCTGGTACAGCTTTGATGCTTTACCATCCCCAAAATATGTTGATCAAATGCTCGGTGGTGCTTTGTTTGATATTGATTCAACCCAGCTACTCGATGATTTTTACGAAGAAAGTGATATTCGTCTGTGGAGCTTCTGCTGA 669 0.4484 MVKREQKIHTEASKPMQSLSSTVSSDGKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPSSSLNYIPQDTVMSPKSIQRVAAAAANSYVDNPTTPPSPPPASASTSSSSLVSSPSMSSDQIDDDISLRSSFGSYNCCDQTNGLVSLMDSWYSFDALPSPKYVDQMLGGALFDIDSTQLLDDFYEESDIRLWSFC 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1015 222 CDD AP2 29 89 IPR001471 GO:0003700|GO:0006355
Dere04g1015 222 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Dere04g1015 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 156 - -
Dere04g1015 222 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Dere04g1015 222 MobiDBLite consensus disorder prediction 116 149 - -
Dere04g1015 222 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Dere04g1015 222 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Dere04g1015 222 MobiDBLite consensus disorder prediction 12 27 - -
Dere04g1015 222 MobiDBLite consensus disorder prediction 131 149 - -
Dere04g1015 222 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Dere04g1015 222 FunFam ethylene-responsive transcription factor ERF014-like 29 89 - -
Dere04g1015 222 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Dere04g1015 222 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Dere04g1015 222 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1015 Dere-ChrDere04 10836098 10836766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1015 1 221 AP2-EREBP Transcription Factor Family AT1G21910 47.692 1.55e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere04g1015 AP2 4.4e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1015 04 10836098 10836766 Dere04g1015 04 10836098 10836766 ECH