Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1013 ATGTCTTTGAGCCCTGCTCGTGAAAGGACGAATGGCGAACCCAGGACCAACCAGTTCTATTGGTGCTACCAGTGCAACCGAATGGTCAGGGTCGCCTCCACAGACTCGTCCGACATCACCTGCCCTCGCTGTTCTGGCCAGTTTCTCTCTGAAATCAACATATCAAGGCCAAGACTTCTTGTGGATTTCACCGACCACGACCATTCACCAGAAGCACGTTTGCTAGAAGCCCTTTCTCTATTGCTTGACCCACCAATTAGGCGGTTTAATGGCACTCTCCACGACCCAGAAGCTCAACCTCCACGCTTTCGTTGGATTCAGGAGCGACCTCGCCAACAAGAAGGCAGACGTCATGCCGACTCCGATGGTGAAATTCCCGTCCGTCGCGCAACACGTCGACGACATCGTCGTACTGATTACAGAGTTGCTGATCCCGACGCAGACGGGCCAGAACCTGATATCCTACCTCGCCCTCGGACTTGGATAATTCTTCCACCTATAGATCCGTCTAACTCATTTGAACCGATTCCACGACGACAAAGCCCGATAACGCGTGGGGTTGACCCGAGAGACTACTATTTCGGGCCGGGCCTGGGGGAACTAATTGACCAGTTGACGCAAAATGATCGGCAAGGTGCACCGCCGGCGCCGGACAGGGTCATCAATGCGATTCCGAGTGTGACTATCTCGGAGAGCCATCTGAAGGAGAACCCTTACTGCCCGATTTGCCTGGAAAAATTTGAAGTGGGCGGAGATGCAAGGGAATTGCCCTGCAGACATATATACCATTCAGATTGCATTGTTCCTTGGCTAAGGCTTCACAATTCTTGCCCTGTTTGCCGGCTTGAGGTAACGGTGTCTTCGGACTCTGGTGAATCCAGTGACGGAGGAGGCAGGTTGCGGAGGTGCCTGAGGTGGAGTCTAATTCAATTTGGTTCCTTGTGGCCTTTCCATGGAAGGCATCGGCGGATTCATCCAGAAGGACAGAATATTACTGCTTCTTCATGGGCAGCTAATCCACGGCGGTTCCCATGCTGTATTCTTTAG 1047 0.5272 MSLSPARERTNGEPRTNQFYWCYQCNRMVRVASTDSSDITCPRCSGQFLSEINISRPRLLVDFTDHDHSPEARLLEALSLLLDPPIRRFNGTLHDPEAQPPRFRWIQERPRQQEGRRHADSDGEIPVRRATRRRHRRTDYRVADPDADGPEPDILPRPRTWIILPPIDPSNSFEPIPRRQSPITRGVDPRDYYFGPGLGELIDQLTQNDRQGAPPAPDRVINAIPSVTISESHLKENPYCPICLEKFEVGGDARELPCRHIYHSDCIVPWLRLHNSCPVCRLEVTVSSDSGESSDGGGRLRRCLRWSLIQFGSLWPFHGRHRRIHPEGQNITASSWAANPRRFPCCIL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1013 348 SMART ring_2 240 280 IPR001841 -
Dere04g1013 348 MobiDBLite consensus disorder prediction 91 158 - -
Dere04g1013 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 286 IPR013083 -
Dere04g1013 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 113 283 - -
Dere04g1013 348 MobiDBLite consensus disorder prediction 101 129 - -
Dere04g1013 348 SUPERFAMILY RING/U-box 220 287 - -
Dere04g1013 348 MobiDBLite consensus disorder prediction 137 153 - -
Dere04g1013 348 FunFam E3 ubiquitin-protein ligase RING1-like 204 287 - -
Dere04g1013 348 ProSiteProfiles Zinc finger RING-type profile. 240 281 IPR001841 -
Dere04g1013 348 Pfam Ring finger domain 239 281 IPR001841 -
Dere04g1013 348 Pfam zinc-ribbon 18 52 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1013 Dere-ChrDere04 10816097 10817417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1013 212 298 C3H Transcription Factor Family AT1G68180 44.828 7.82e-23 93.6