Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1009 ATGGTGAATAAATACTGTTCCCTCTTTCTCTCTCTCTCTGTGACGGTCTTGGACACTTCAAGCGCAGCTATGGCTATGATGCCAATAAACATGGACATGGGCACCATCCCTGAGCTTGACTTCTCCGGCTACAGCACCACCACTACGCCCACTTCCGACGACGACCATGTCGGTTGCAATTGGAACCACTGGTCCCCCCTCGTCAACTGGGAGGCCTTCACCGGCGGCCAAGATGACTTCCACGGCCTCATAGAGTCCATGATGGAGGGCGCTGCCGTAATGCTTAGTCCCCACCACGGCACGGAAGAAAGCGACCACTCGGCAAATTCCACGTCGACGGAGGTAACCGTGGTGGACGAAGAGGCGAACGACAGCGTCGACGATTTCAAGGGTCTTAGGCTGGTGCACCTTCTGATGGCGGCCGCCGAGGCTCTCTCCGGCGCCAACAAGAGCCGTGATCTGGCTCGAGTGATATTGATTCGGCTCAAGGAGTTGGTTTCCCCAACCGACGGCTCCAACATGGAGAGGCTGGCGGCGTATTTTACGGAAGCCTTACAGGGTTTGCTAGAAGGCGCAGGGGGTGCTCACAATAACAACAACCATAAGCATCTTATCGGCAACGGAGCGTGCTGCGAGGACCACCATCCCACGGACATATTGGCTGCCTTCCAGCTTCTTCAGGACATGTCTCCTTATGTGAAGTTCGGCCACTTCACCGCCAATCAGGCCATCATGGAGGCCGTGGCCCACGAGAGGCGGGTCCACATCTTCGACTACGACATCATGGAAGGAATCCAATGGGCCTCCTTAATTCAGGCCCTCGCCTCTAAAACCGATGGCCCCCCCGCCCCGCACCTCAGGATCACTGCATTGTCCAGAAGCGGAAGCGGAAGCGGAAGAAGATCCATTGCCACCGTGCAAGAGACCGGGCGCCGTTTGACGGCGTTCGCGGCTTCCGTGGGTCAACCGTTCTCGTTTCATCAATGCAGGTTGGACTCGGACGAAACGTTTCGTCCTTCGGGTCTGAAGCTTGTTCGAGGAGAGGCCTTGGTGTTTAACTGCATGCTTCACCTCCCTCACCTCACCCACCGCTCACCCGATTCGGTGGCGTCGTTCTTGAAGGGAGCCAAGACCTTGAATCCGAGACTAGTGACATTGGTAGAGGAGGAGACAGGACCCATGCGGGGTGTGGGGTTCGTGGGTCGGTTCATGGACTCTTTGCACCATTACTCGGCGCTGTACGATTCGCTGGAAGCGGGGTTCCCCATGCAGAGTCGGGCGAGGGCATTAGTGGAACGGGTGTTCTTGGGGCCCCGAATATCGGGGTCGTTGGGGAGGATATACAGAAGCGGAGGGGAAGAGGAGAGAGGGTCGTGGGGGGAATGGTTGGGTGAGGTCGGGTACAAGGGAGTAGCCATAAGCTTCGCCAATCATTGTCAGGCCAAACTGTTACTGGGACTGTTCGACGATGGGTATGGGGTAGAGGAGTCCGGTTGCAATAAGTTGGTGTTGAGTTGGAAATCGAGGCGTTTGCTTTCTGCCTCTCTTTGGACTTCTTCCCACGCTGCTTCTGAATTAATGGTAGGTTGCACCCAGCTCGACTGTCAACAAAAAGTCGACCGTGACACTCTCGCAGTTCCTCTGCTTTGCCATCCCTGTTATGGTCATATAGCCCTTATGAAACCCTAA 1689 0.5607 MVNKYCSLFLSLSVTVLDTSSAAMAMMPINMDMGTIPELDFSGYSTTTTPTSDDDHVGCNWNHWSPLVNWEAFTGGQDDFHGLIESMMEGAAVMLSPHHGTEESDHSANSTSTEVTVVDEEANDSVDDFKGLRLVHLLMAAAEALSGANKSRDLARVILIRLKELVSPTDGSNMERLAAYFTEALQGLLEGAGGAHNNNNHKHLIGNGACCEDHHPTDILAAFQLLQDMSPYVKFGHFTANQAIMEAVAHERRVHIFDYDIMEGIQWASLIQALASKTDGPPAPHLRITALSRSGSGSGRRSIATVQETGRRLTAFAASVGQPFSFHQCRLDSDETFRPSGLKLVRGEALVFNCMLHLPHLTHRSPDSVASFLKGAKTLNPRLVTLVEEETGPMRGVGFVGRFMDSLHHYSALYDSLEAGFPMQSRARALVERVFLGPRISGSLGRIYRSGGEEERGSWGEWLGEVGYKGVAISFANHCQAKLLLGLFDDGYGVEESGCNKLVLSWKSRRLLSASLWTSSHAASELMVGCTQLDCQQKVDRDTLAVPLLCHPCYGHIALMKP 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1009 562 Pfam GRAS domain family 134 518 IPR005202 -
Dere04g1009 562 ProSiteProfiles GRAS family profile. 125 518 IPR005202 -
Dere04g1009 562 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 108 514 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1009 Dere-ChrDere04 10795118 10801240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1009 127 519 GRAS Transcription Factor Family AT5G41920 35.930 1.53e-55 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere04g1009 GRAS 2.6e-96 CL0063