Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0983 ATGGCACAAACGCTTGCGCTGCCTGTGGCGCCTTCTCTCTCCGTTATTTGCAATACCCATGTCTCCAATTCGCTTTCTAGAGGCGTCTCTTTCCGATTCTCCAAACCTCCCAAGGTTCATGGTCTAAGCATCCAATGTGTTCGTGTTGGAGGTGTAGAGATTCCAAACAACAAGCGAATTGAGTTCTCACTTCAGTATATACATGGAGTTGGGCGGAGCAGAGCTCGGCAAATCCTGTCTGACATCAGCATGGATAACAAAATCACAAAGGACTTGTCTGAGGAGGAACTCATCACTCTCAGAGATGAAGTATCCAAGTACATGATTGAAGGCGACTTGAGGCGGTTTAATGCACTTAATATAAGGAGATTGAAGGAGATCCAATGCTATAGAGGAATCAGACATATTCAGGGTCTTCCCTGTAGAGGACAACGCACCAAGAACAATTGCCGGACCTTGAAAGGTAAGAGGGTCGCCATTGCTGGAAAGAAAAAGAAGTAA 501 0.4571 MAQTLALPVAPSLSVICNTHVSNSLSRGVSFRFSKPPKVHGLSIQCVRVGGVEIPNNKRIEFSLQYIHGVGRSRARQILSDISMDNKITKDLSEEELITLRDEVSKYMIEGDLRRFNALNIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKRVAIAGKKKK 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0983 166 ProSitePatterns Ribosomal protein S13 signature. 131 144 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere04g0983 166 Gene3D 30s ribosomal protein s13, domain 2 116 166 IPR027437 -
Dere04g0983 166 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 42 164 - -
Dere04g0983 166 Hamap 30S ribosomal protein S13 [rpsM]. 46 162 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere04g0983 166 FunFam 30S ribosomal protein S13 116 165 - -
Dere04g0983 166 ProSiteProfiles Ribosomal protein S13 family profile. 49 155 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere04g0983 166 FunFam 30S ribosomal protein S13 43 115 - -
Dere04g0983 166 Gene3D - 47 115 - -
Dere04g0983 166 SUPERFAMILY S13-like H2TH domain 47 158 IPR010979 GO:0003676
Dere04g0983 166 Pfam Ribosomal protein S13/S18 48 152 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere04g0983 166 NCBIfam 30S ribosomal protein S13 48 157 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0983 Dere-ChrDere04 10425231 10426854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0983 45 164 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 29.861 3.81e-07 45.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0983 04 10425231 10426854 Dere04g0983 04 10425231 10426854 ECH