Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0966 ATGCGTCCTCCAAAGTCACGGCAAGTTCCTCCGGCGCAGGTGCAGAGTTGCCGTCTCGACCCTAAAATCTGGCGAGCATGTGCCGGTGCATCCGTTCAAATCCCTACTCTGCATTCTAGGGTTTTTTACTTCCCTCAGGGCCATCTCGAGCACGCCGCTTCACCTCCGCATCTTAATCCTCTAGTCTACTGCAGGCCTGTCATTCCCTGCCGCATCTCCGGTGTTCAGTTTCTTGCTGATCCTGCCACAGATGAGGTATTTGCTAAGCTTCTGCTCCATCCTTTGAGTGATCACAACCTTCATCACATTGCCAATTCTGAGGAAGCGCCGGATGATGACAAGATCGTGTCATTTGCGAAGATTCTGACGCCTTCCGACGCCAACAATGGCGGTGGATTCTCTGTTCCTAGGTATTGTGCTGATTCTATCTTCCCGCGGCTAAATTTCCAGGTCGAGCGGCCCACCCAGACATTGATCGTGACTGATGTTCACGGCACCGTCTGGGATTTTCGCCACATTTATCGGGGCACGCCGAGGCGGCACTTGCTCACTACTGGCTGGAGTAAGTTTGTCAATCACAAGAAGTTGGTTGCTGGTGATTCCGTGGTTTTCATGAAGAATTCTAGTGGGCAGATGTTCGTTGGGATACGCAGAGCTGTGCGATTTGCTGCAGGAAGTGGTGGCGATTGCGCCTTATGGTGTTCCCAGATCGGTGGCGTGAGAACTAAGTCGGAAGGGGAGCAGCAGGAAGAGGCCTATATAGGTTCCAGAGTGAAAGAAGGGTTTTCAAGGAAAACTCTGGGGAAATTGTCGTCTAAGGAAGTTGCAAATGCTGTAGAATTGGCAGCACAAAATATGCCGTTTGAGGTCGTGTATTATCCAAGGGTTGGATGGTCAGACTTTGTGATGAAGGCGGAAGTTGTGGAGGCAGCTTGGAATGTCGCATGGACTTCCGGAATGAGAGTCAAAATGGCTATGGAGACAGAGGATTCGTCCAGGATGACATGGTTTCAGGGGACAGTATCTTCTGCATCTGCTACCGAGAATGGGCTTTGGCGGGGTTCTCCTTGGCGTACGCTTCAGGTTATATGGGATGAACCTGAAGTCTTGCAGAATGCAAAGCGAGTCAGCCCCTGGGAGGTTGAACCAGTTTCCCCCGCTCCTTCCCCAAATACAGCATTACCCTCACCTCCCCTGATTACAGCATTTCCCGCACCTCCCCCGATTACAGCATTACCTGCACCTCCCCTGGATACAGCATTACCTCCTGCAAAAAGGTTTAGAGCTGCTCAGTTTTGTGGGGCGGCTACTGATAGGGAGGGAGACCCCTTCTTTTCTATGACAGGATTCACGAATTCAACAATGAGGCACTTGGATCAGTCATTGTTGAGTTACAATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATTTATTATCTCTATCAAGTCTGTCCAACTTGGACAGTGATAATTCTCTTCTTTGTATTAGTAATAATACGTTTGGGAACATGGTACCAAGGATGAAAACTGTGTCAACAGAGCTAACCATTGACAGTTCTCAATCCGATAATTTGTCCCCAGATAGCCAGAATAGTTTGCCTTGCTGCGGCACAGAATTTGCTGGGAGACAGAGCTGCAACTTAACAAAACTTGGTGCTAGTTCAATTCAGCTATTTGGTAAGCTCATTCATTTGGAACAGCCCGTTGAAAGTGGTTCGCATGCTGCTGGGTGCACAGGAGACGAGGGCTTGATGTCCAATGCCTATGAGCTTGGGCAGTTGAGGCGGCATGTTGTTTGTGAAGTAGTAGATAAGGATGATTTATCCATTCATCCAAATTCAAGAGTATTGTATAGTGGTTCATTGACTGCCTGTTTGCCATCGGAGACAAAGGTGCAGCTTGACAACATCAAATGGAACGGCTAA 1929 0.4904 MRPPKSRQVPPAQVQSCRLDPKIWRACAGASVQIPTLHSRVFYFPQGHLEHAASPPHLNPLVYCRPVIPCRISGVQFLADPATDEVFAKLLLHPLSDHNLHHIANSEEAPDDDKIVSFAKILTPSDANNGGGFSVPRYCADSIFPRLNFQVERPTQTLIVTDVHGTVWDFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDSVVFMKNSSGQMFVGIRRAVRFAAGSGGDCALWCSQIGGVRTKSEGEQQEEAYIGSRVKEGFSRKTLGKLSSKEVANAVELAAQNMPFEVVYYPRVGWSDFVMKAEVVEAAWNVAWTSGMRVKMAMETEDSSRMTWFQGTVSSASATENGLWRGSPWRTLQVIWDEPEVLQNAKRVSPWEVEPVSPAPSPNTALPSPPLITAFPAPPPITALPAPPLDTALPPAKRFRAAQFCGAATDREGDPFFSMTGFTNSTMRHLDQSLLSYNTFPAGMQGARHDLLSLSSLSNLDSDNSLLCISNNTFGNMVPRMKTVSTELTIDSSQSDNLSPDSQNSLPCCGTEFAGRQSCNLTKLGASSIQLFGKLIHLEQPVESGSHAAGCTGDEGLMSNAYELGQLRRHVVCEVVDKDDLSIHPNSRVLYSGSLTACLPSETKVQLDNIKWNG 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0966 642 CDD B3_DNA 117 218 IPR003340 GO:0003677
Dere04g0966 642 Gene3D - 115 220 IPR015300 -
Dere04g0966 642 SUPERFAMILY DNA-binding pseudobarrel domain 108 226 IPR015300 -
Dere04g0966 642 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 572 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere04g0966 642 Gene3D - 316 387 - -
Dere04g0966 642 FunFam Auxin response factor 116 220 - -
Dere04g0966 642 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Dere04g0966 642 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Dere04g0966 642 SMART B3_2 118 220 IPR003340 GO:0003677
Dere04g0966 642 Pfam Auxin response factor 278 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0966 Dere-ChrDere04 10251292 10254902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0966 1 584 B3 DNA Binding Superfamily AT1G77850 46.374 1.44e-171 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere04g0966 B3 4.3e-23 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2444 05 34960201 34963880 Dere04g0966 04 10251292 10254902 CCT
Dere04g0966 04 10251292 10254902 Dere04g0966 04 10251292 10254902 ECH