Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0939 ATGGGTTCAGTGCCTACCGAAGCTTCCAGCATGAGAGAGCAGGGGCACCTTCTTCTTGAAGAACCAGGACAGAAAGAGAAGTCCCAGTGGGTGCTGAATTCACCCAATCCACCGCCTCTCTGGAATAAGCTGTTTAGTAAAGTCAAGGGGAACAAGGCCTTTTCAACATCCAAGAAACGAACTGCCTATGCACATGCTGTTTCATTCTTCCAGAGTTTATTCCCAGTCCTTGTATGGTTCAGAAATTACAAACCCTCTAAGTTTAAAGATGATCTTTTAGCAGGTTTAACTCTTGCCAGCCTCAGCATACCTCAGGGCATAGGATATGCTAATTTAGCAAGACTTAACCCTCAATATGGCCTGTATACAAGTGTTGTTCCTCCTCTTATTTATGCTGTGATGGGGAGCTCAAGGGAAATTGCAATTGGACCCGTGGCTGTAGTGTCGTTGCTGCTATCCTCTACAGTCCAGAAAGTGATAGATCCTGCTGTTAACCCAGATGCTTATAGAAGGCTTGTCTTTACTGTGACCTTCTTTGCTGGAATCTTTCAAGCTTCATTTGGCATTTTTAGGTTGGGTTTTCTTGTGGATTTTCTTTCACACTCTGCCCTCGTTGGATTCATGGCAGGTGCAGCCATCATTATTGGCCTGCAGCAACTGAAGGGGCTGCTTGGGATTGCTCATTTCACTACCAATACTGATGCCATTTCCGTCTTCAAGTCTGTTTACAACTCACTCCATCTTCAGGTCACTTCTAAAGAAAAATGGTACCCTCTAAATTTTGTCTTGGGGTTTTCATTCCTGATTTTCCTCCTGTCTAGCCGTTTTATTGGCAGGAGAAACAAAAAACTTTTCTGGTTGCCAGCTATTTCTCCTCTCATGTCAGTTATACTATCTACTCTAATTGTGTATTTGACAAAAGCTGATAAGCATGGGGTTATTATAATAAAGCATGTTAAAGGAGGCCTCAATCCAGGTTCAGCTCATGAGTTACAATTCCATGGTCAACATGTTGCAGAAGCAGCTAAAATTGGATTGCTTTCTGCCATTATCGCTCTCACCGAAGCAATAGCTGTTGGGCGATCTTTTGCTTCCATTAAAGGATACCATCTTGATGGGAACAAAGAAATGTTAGCAATGGGCTTCATGAACATTGCGGGATCTTTAACTTCATGCTATCTGGCAACTGGTTCTTTCTCAAGGACTGCAGTAAATTTCAGTGCTGGATGTCAAACGGCAGTATCAAATATTGTAATGGCAATTACTGTGATTCTGTCATTAGAACTGTTTACAAGGCTGTTATACTATACTCCTGTGGCTATCCTTGCTTCCATCATTCTCTCTCCACTTCCTGGACTCGTCAACATAAGCGAAGCTCGCTACATCTGGAAGGTTGACAAATTAGATTTTCTTGCCTGTCTTGGAGCTTTTCTTGGCGTCTTGTTTGTATCAGTGGAGATTGGTCTTCTTGTTGCAGTATCAATATCGTTTGCAAAGATACTAATACAGACAATTAGACCTGGGATAGAAGTTCTGGGTAGAGTTCCAAGAACAGAAGCATTTTGTGATGTGAGACAATATCCCATGGCCACAAGCACTCCAGGCATCATGGCTATTCGCATCAGCTCAGGCTCTCTTTGCTTTGCAAATGCAAATTTTGTCAGAGAAAGAATACTGAAGTGGGTGGCGAAAGAAGATGACGACCTCAAAGAAACTGCAAAGGGAAGGGTCCAAGGAGTAATCCTGGACATGACCAACCTGATGAACGTTGACACCTCGGGAATTCATGCACTGGAGGAACTGCACGAGAGGTTGATTTCGCGTGGTGTAGAATTAGCCATGGTGAACCCAAGGTGGCTAGTGATTCACAAGCTAAAACTAGCGGAATTCGTAGATAAAATCGGGAAAGAATGGGTTTTTCTTACTGTTGGCGAAGCTGTAGACGCCTGTCTGTCTTCTAAGTTTGGAGCAATTCCTTGA 1980 0.4318 MGSVPTEASSMREQGHLLLEEPGQKEKSQWVLNSPNPPPLWNKLFSKVKGNKAFSTSKKRTAYAHAVSFFQSLFPVLVWFRNYKPSKFKDDLLAGLTLASLSIPQGIGYANLARLNPQYGLYTSVVPPLIYAVMGSSREIAIGPVAVVSLLLSSTVQKVIDPAVNPDAYRRLVFTVTFFAGIFQASFGIFRLGFLVDFLSHSALVGFMAGAAIIIGLQQLKGLLGIAHFTTNTDAISVFKSVYNSLHLQVTSKEKWYPLNFVLGFSFLIFLLSSRFIGRRNKKLFWLPAISPLMSVILSTLIVYLTKADKHGVIIIKHVKGGLNPGSAHELQFHGQHVAEAAKIGLLSAIIALTEAIAVGRSFASIKGYHLDGNKEMLAMGFMNIAGSLTSCYLATGSFSRTAVNFSAGCQTAVSNIVMAITVILSLELFTRLLYYTPVAILASIILSPLPGLVNISEARYIWKVDKLDFLACLGAFLGVLFVSVEIGLLVAVSISFAKILIQTIRPGIEVLGRVPRTEAFCDVRQYPMATSTPGIMAIRISSGSLCFANANFVRERILKWVAKEDDDLKETAKGRVQGVILDMTNLMNVDTSGIHALEELHERLISRGVELAMVNPRWLVIHKLKLAEFVDKIGKEWVFLTVGEAVDACLSSKFGAIP 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0939 659 ProSitePatterns SLC26A transporters signature. 117 138 IPR018045 GO:0008271|GO:0008272
Dere04g0939 659 CDD STAS_SulP_like_sulfate_transporter 527 643 - -
Dere04g0939 659 Gene3D STAS domain 506 653 IPR036513 -
Dere04g0939 659 FunFam Sulfate transporter 31 506 653 - -
Dere04g0939 659 SUPERFAMILY SpoIIaa-like 535 650 IPR036513 -
Dere04g0939 659 NCBIfam sulfate permease 75 646 IPR001902 GO:0016020|GO:0055085
Dere04g0939 659 PANTHER SULFATE TRANSPORTER 52 651 IPR001902 GO:0016020|GO:0055085
Dere04g0939 659 Pfam STAS domain 527 646 IPR002645 -
Dere04g0939 659 ProSiteProfiles STAS domain profile. 543 650 IPR002645 -
Dere04g0939 659 Pfam Sulfate permease family 88 474 IPR011547 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0939 Dere-ChrDere04 9856043 9859113 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0939 24 654 Inorganic Solute Cotransporters AT5G10180 63.793 0.0 834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2421 05 34606283 34609415 Dere04g0939 04 9856043 9859113 CCT
Dere04g0939 04 9856043 9859113 Dere04g0939 04 9856043 9859113 ECH