Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0926 ATGAATTTCTACAGCAGTACGCAACTTAAGTCAGATCCCTTCAAAGGTGAGCTAATGGAAGCTCTTGAACCTTTTATGAAAAGTGCTTCCCAAACTCCCTGTCCCTCCTCACTCTCATCTCCTGCTTCAAATGCATTCCTACCTTCTACTTCTCACTCTCCTCCTTTGGACTTCCTCCATTCCTCTCCTTCAGTCCCCACACAGCCCAATTTGTATGCAGATGGTTGCTCCCCAACGATGACCCATGTATTTGCCGACGGGTTATCTAACAACCAAAACTTGATTGGTTTCGGGCAGCCAAGTTCTGCTCTTGGGCTCAACCATCTTACCCCATCTCAGATTGACCGCATCCAAGCTCAGATCCATCTCCAGAACTTGCCATTGCAGCAAAATACCCTCAGCTTCCTCAGCCCCAAACCTATTCCAATGAAGCAAATGGGTACGCCTCCTAAACCCACCAAGCTCTACAGAGGGGTCAGGCAACGGCATTGGGGAAAATGGGTCGCTGAGATCCGCCTCCCCAAGAACCGGACACGGCTCTGGCTCGGTACCTTCGATACTGCGGAAGAAGCTGCTCTAGCCTACGACAAGGCCGCTTACAAGCTCAGAGGTGACTTTGCTAGGCTCAACTTCCCCAACCTCCGACACCAAGGTTCCTGTGTTGAGGGTGAATTCGGGGAGTATAAGCCTCTACATTCCTCTGTGGATGCAAAGCTTCAAGCAATTTGCGAAAGCATGGCTGATATGCAGAAACAGGGGAAGTCAGAGAAACCGAAGAGGTCTTCAGGGCGGTCCAAATTGGGTTCAGCGACGGCGCAACCTCAGACGGTGACGCCATCGATGGAGCAGCCGGTGGCCGGCAAAGTTGATTTGAAGGGATCGGGGAACTGCTACAGAATGGAGACTTCCTCATCTCCTGTGATGACTGAGAGCGAGGAATCCGTAGAATCTTCTCCTCTATCGGATCTGACTTTCGCCGATGTTACTGAGCCACAATGGGAAAGTGTTGCTGACATTCTAAATCTGCAGAAGTACCCGTCTTATGAGATCGATTGGTCATCTTTGTGA 1068 0.5047 MNFYSSTQLKSDPFKGELMEALEPFMKSASQTPCPSSLSSPASNAFLPSTSHSPPLDFLHSSPSVPTQPNLYADGCSPTMTHVFADGLSNNQNLIGFGQPSSALGLNHLTPSQIDRIQAQIHLQNLPLQQNTLSFLSPKPIPMKQMGTPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSCVEGEFGEYKPLHSSVDAKLQAICESMADMQKQGKSEKPKRSSGRSKLGSATAQPQTVTPSMEQPVAGKVDLKGSGNCYRMETSSSPVMTESEESVESSPLSDLTFADVTEPQWESVADILNLQKYPSYEIDWSSL 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0926 355 CDD AP2 154 214 IPR001471 GO:0003700|GO:0006355
Dere04g0926 355 SMART rav1_2 155 218 IPR001471 GO:0003700|GO:0006355
Dere04g0926 355 Gene3D AP2/ERF domain 155 213 IPR036955 GO:0003700|GO:0006355
Dere04g0926 355 MobiDBLite consensus disorder prediction 264 280 - -
Dere04g0926 355 Pfam AP2 domain 156 204 IPR001471 GO:0003700|GO:0006355
Dere04g0926 355 MobiDBLite consensus disorder prediction 248 280 - -
Dere04g0926 355 MobiDBLite consensus disorder prediction 301 321 - -
Dere04g0926 355 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 2 355 - -
Dere04g0926 355 FunFam Ethylene-responsive transcription factor 2 154 213 - -
Dere04g0926 355 SUPERFAMILY DNA-binding domain 155 213 IPR016177 GO:0003677
Dere04g0926 355 ProSiteProfiles AP2/ERF domain profile. 155 212 IPR001471 GO:0003700|GO:0006355
Dere04g0926 355 PRINTS Ethylene responsive element binding protein signature 178 194 IPR001471 GO:0003700|GO:0006355
Dere04g0926 355 PRINTS Ethylene responsive element binding protein signature 156 167 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0926 Dere-ChrDere04 9702314 9703381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0926 1 355 AP2-EREBP Transcription Factor Family AT1G78080 50.938 2.59e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere04g0926 AP2 8.1e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2410 05 34500201 34501274 Dere04g0926 04 9702314 9703381 CCT
Dere04g0926 04 9702314 9703381 Dere04g0926 04 9702314 9703381 ECH