Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0923 ATGCACGCAGCAATGCCGACACATTTCCAAAAACCTAATTCTGAATCAAAACTTCTGTCAGCAAACGAGAAATGTGGTGTACAATTGCACATAGTAAGAGTTGTCAAGATGACGAACCAGAATCTGGTGGTTCCTGATGTGAAATCTTGTATTAACACCCTTATTGAAGTGGCTGCGTCCATTTCAAACTCAACTATGTTGCCTGGCGGAGCGGTGCCAGAACCGCTGACCGTGCTTGGTGAGATTCTGGGAATATCCCAGAAAAAGTTGATGAAGAGGCTTGAGGATGGAGGAGGCAAAGGTGGAGCTAAGGTTAATGCCTGGATTGATTCAATGAGAGCTTCTTCTCCCACTCGAATCAAATCCACCCTCCCTATTTCTCAAAACCACGACTTAAGCTCTTGGACTCTTCATCATCCTTCAGCGCTCAGCGTGTTTGATCAGATCATTTATGCATCAAAAGCAAAGCAAATTGTAATCTTCCTTGACTACGATGGAACCCTCTCCCCAATTGTTGCAGACCCAGATAAAGCATTCATGACTAAAAAGATGAGAGCTACAGTAAAGGACATAGCAAGACATTTTCCTACGGCCATCGTCAGCGGGAGGTGCAGAGATAAGGTGTACAAGTTTGTAAGATTATCAGAGCTGTACTACGCAGGTAGCCATGGCATGGACATCAAGGGACCAACGAAAAGCCAGAGTCCCAAGAAAGGTAATCAAGCAGTACCCTTCCAACCCGCGAGCCAATTCTTGCCCATGATCAATGAGGTTTACAAGATCCTGTTAGACAAAACAAAATCTGTGCCAGGGGCTAAGGTTGAGAATAACAAGTTTTGCTTGTCCGTGCATTTCCGTTGTGTTGATGAAAAGAGTTGGGGTGCACTGGCGGAACAAGTTCGATTAGTGCTCAATCAGTACCCAAAACTTAGGTTGACGGAAGGGAGAAAAGTGCTAGAGATCCGCCCAACCATCAAATGGGACAAGGGCAAAGCTCTTGAATTTTTGTTACAGTCGCTGGGATTCGCCAATTCGAAGGATGTCTTTCCCATTTATATTGGTGATGACCGAACAGACGAGGATGCTTTTAAGGTTTTACGCAGTAGGGGTCAAGGAATGGGAATTCTTGTATCTAAAGTTCCAAAAGAAACAGAAGCTTCCTATACTTTACAAGACCCATCAGAGGTCGAGCAGTTTTTGCGGCGTTTGGTTGGTCGAGTGGAAAAGAAGGAACAATGTCACTCCTAG 1248 0.4479 MHAAMPTHFQKPNSESKLLSANEKCGVQLHIVRVVKMTNQNLVVPDVKSCINTLIEVAASISNSTMLPGGAVPEPLTVLGEILGISQKKLMKRLEDGGGKGGAKVNAWIDSMRASSPTRIKSTLPISQNHDLSSWTLHHPSALSVFDQIIYASKAKQIVIFLDYDGTLSPIVADPDKAFMTKKMRATVKDIARHFPTAIVSGRCRDKVYKFVRLSELYYAGSHGMDIKGPTKSQSPKKGNQAVPFQPASQFLPMINEVYKILLDKTKSVPGAKVENNKFCLSVHFRCVDEKSWGALAEQVRLVLNQYPKLRLTEGRKVLEIRPTIKWDKGKALEFLLQSLGFANSKDVFPIYIGDDRTDEDAFKVLRSRGQGMGILVSKVPKETEASYTLQDPSEVEQFLRRLVGRVEKKEQCHS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0923 415 Gene3D - 158 242 IPR023214 -
Dere04g0923 415 Gene3D - 265 415 IPR023214 -
Dere04g0923 415 CDD HAD_TPP 159 396 - -
Dere04g0923 415 Pfam Trehalose-phosphatase 161 394 IPR003337 GO:0003824|GO:0005992
Dere04g0923 415 SUPERFAMILY HAD-like 159 404 IPR036412 -
Dere04g0923 415 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 85 413 IPR044651 GO:0004805|GO:0005992
Dere04g0923 415 NCBIfam trehalose-phosphatase 155 404 IPR003337 GO:0003824|GO:0005992
Dere04g0923 415 FunFam Trehalose 6-phosphate phosphatase 254 413 - -
Dere04g0923 415 FunFam Trehalose 6-phosphate phosphatase 158 244 - -
Dere04g0923 415 NCBIfam HAD-IIB family hydrolase 160 368 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0923 Dere-ChrDere04 9679597 9683924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0923 143 403 Trehalose Biosynthesis Gene Families AT1G70290 26.619 1.09e-09 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2405 05 34464107 34465996 Dere04g0923 04 9679597 9683924 CCT
Dere04g0923 04 9679597 9683924 Dere04g0923 04 9679597 9683924 ECH