Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0891 ATGGCTTACCCACATTACCGATCACAGTTCGGCGACACGACATTCACCAAAGTGTTTGTTGGAGGACTCGCTTGGGAGACTCCCACTGAAGAAATGCGTAAATATTTCGAGCAGTTCGGAGACATTCTTGAGGCTGTTATAATTACTGATAAGAATACAGGAAAATCTAAAGGCTATGGATTCGTAACATTCCGTGATCCAGAATCAGCCAGAAGGGCTTGTGCCGATCCAAACCCAGTGATAGATGGAAGAAGAGCGAATTGTAACATTGCTTCTCTGGGACGACCTCGACCTTCCCCACCCCGAGGAAGGAATATATTTCAAGGTGGAGGCACAGGACAGAGTGCAGCGTCGTATGGGGGTGTTCCGGCAGCAGTACCCCCACCACCGCCACCGCCACCTCCGCCGGCGCCGGCGTCTCCTCTGATGTACCCGCCATATGGCTACCCACCCTACACTCCTGATTATGGGTACCACCAAGCGGCATTATACAACTCACAGATTCAGCAGTCACAATACTATCAGCCAGTGTATGGAGCATCGTCTTCCAACGTGGGCTCCCCTTATTACTATGGATATTCTGTGCAAGCACCTAGAGCCTCATATTCTACACCCCAACCTCATCGCCTGCCACCTGGACCCTCCTATATATACTACCCTTACCCTACACCTACACCCATGGAACCCTCATCCCTCTCCGCTTATCGTCCGCCACAACAACCAACACCGTTAAGGCAGCCCCTCCCTTCCCCAACTGATTCACAGTCACAGACTCAGCAGCGTACCTCCTCCGAGACAGCAGCTGGAGTAGTTACAGCATCTTCGGAAAGTCCAAATGCCCCAGGGCAGAATTAA 855 0.517 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRNIFQGGGTGQSAASYGGVPAAVPPPPPPPPPPAPASPLMYPPYGYPPYTPDYGYHQAALYNSQIQQSQYYQPVYGASSSNVGSPYYYGYSVQAPRASYSTPQPHRLPPGPSYIYYPYPTPTPMEPSSLSAYRPPQQPTPLRQPLPSPTDSQSQTQQRTSSETAAGVVTASSESPNAPGQN 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0891 284 MobiDBLite consensus disorder prediction 200 284 - -
Dere04g0891 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Dere04g0891 284 PANTHER BOULE-RELATED 6 265 - -
Dere04g0891 284 MobiDBLite consensus disorder prediction 91 138 - -
Dere04g0891 284 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Dere04g0891 284 SMART rrm1_1 17 89 IPR000504 GO:0003723
Dere04g0891 284 MobiDBLite consensus disorder prediction 123 138 - -
Dere04g0891 284 SUPERFAMILY RNA-binding domain, RBD 9 116 IPR035979 GO:0003676
Dere04g0891 284 CDD RRM_RBM24_RBM38_like 16 91 - -
Dere04g0891 284 MobiDBLite consensus disorder prediction 205 227 - -
Dere04g0891 284 Gene3D - 3 113 IPR012677 -
Dere04g0891 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Dere04g0891 284 MobiDBLite consensus disorder prediction 249 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0891 Dere-ChrDere04 9419476 9422754 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0891 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 3.17e-15 73.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0891 04 9419476 9422754 Dere04g0891 04 9419476 9422754 ECH