Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0890 ATGGAGCCCTCGGATACACTATGTAGCTCTTATTACCTGCCTTCTTCACATGCTGATCCTACGTCTCATTCCAATCTTTTGCCAGCCATGAATCGCAGTCATCAGCTTCAGCCTCTACCTCTACTAAGCAGCTTCCTTGGTTCAACTCCACTTTGCACAAAATCCTACAGTACTACTCATGATGGTGAGGAGGATGTCACAGTAGCCTTACACATAGGCCTTCCTCATAATTCCAGTGCTGCTTCTGCCAGTCCAAATGGACTTGTTAACGAAGCCCAAGTACCTAGCAATTACTGGATACCAACCCAAGAGCAGATCCTCATTGGATTCAGTCATTTCTCTTGTCCTGTCTGCCTCAAAACCTTCAACCGCTACAACAATCTTCAGATGCATATGTGGGGACATGGATCACAGTATCGTAGAGGACCAGAGTCGCTGAAACGAACACATCCACGACCCTTGTTGGACATTCCATGCTACTGTTGCTCGAGAGGATGCAAGAACAACATAGAGCACCCGAGAGCTAAGCCTCTGAAGGATTTTCGGACGCTGCAGACACACTACAAGAGGAAGCATGGGACCAAACCCTTCATGTGTCGCAAGTGCGGAAAGCCTTTGGCAGTGAAGGGTGATTGGCGAACCCATGAGAAAAACTGTGGTAAGCGTTGGCTCTGCGTTTGTGGTTCTGACTTCAAACACAAGAGATCTCTTAAAGACCATATCAAAGCATTTGGCTCTGGTCATTACTTTTTCTCTTCTTCCTCGGATGGCGTGTAA 777 0.471 MEPSDTLCSSYYLPSSHADPTSHSNLLPAMNRSHQLQPLPLLSSFLGSTPLCTKSYSTTHDGEEDVTVALHIGLPHNSSAASASPNGLVNEAQVPSNYWIPTQEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPESLKRTHPRPLLDIPCYCCSRGCKNNIEHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKPLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHYFFSSSSDGV 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0890 258 Gene3D Classic Zinc Finger 112 135 - -
Dere04g0890 258 FunFam zinc finger protein WIP2-like 112 135 - -
Dere04g0890 258 PANTHER ZINC FINGER PROTEIN WIP2 16 251 IPR043584 GO:0003700|GO:0010468
Dere04g0890 258 SUPERFAMILY beta-beta-alpha zinc fingers 108 135 IPR036236 -
Dere04g0890 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Dere04g0890 258 Gene3D Classic Zinc Finger 156 244 - -
Dere04g0890 258 FunFam Zinc finger protein WIP2 166 248 - -
Dere04g0890 258 Pfam Zinc finger, C2H2 type 113 132 IPR013087 -
Dere04g0890 258 SUPERFAMILY beta-beta-alpha zinc fingers 182 217 IPR036236 -
Dere04g0890 258 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0890 Dere-ChrDere04 9416694 9417745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0890 66 248 C2H2 Transcription Factor Family AT1G34790 70.352 1.13e-98 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere04g0890 zf-C2H2 0.0039 CL0361