Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0879 ATGGAAAATTTGAGGGCGCAGACGGCGGGAGGATACAGAGATCGCAGAGCAGATGCTCTTGGAGACCTTCGAATCCTTCCCGATGAAATCCTCTGCTCAATTTTGGAGCAACTCACTCCTCGAGACGTTGCTCGCGTATCCTGCGTTAGTAGCATAATGTACATACTATGCAATGAAGAACCACTGTGGATGAGTTTATACCTTAAAGGAGCGTCTGGTTTACTTCAGTACGAAGGCTCTTGGAAGAAAACTGCCTTGCATCATGAGAATTTGCCAGATAAATACGTGGAGGGTAATGGAGGACCTCTGCATTTTGATGGATTCAACTCTTTTTTTTTGTACAGAAGATTATATAGGTGTCATACCAAGTTGGATGCATTTTATGTGGATAATGGAAATGTGGAAAGAAGAAAAGATGTCTCTCTAGAAGACTTTTGTGATGAGTATGATGGCAAAAAACCGGTAATGCTTACTGGATTGGCTGATACATGGCCTGCAAGGCATAAATGGACAACTGATCAGCTGTTGCTAAACTATGGAGATGTAGCATTTAAGATTTCTCAAAGGAGTTCGCGGAAGACCTCAATGAAGTTTAAGGATTATGTCTCATACATGAAACTTCAGCATGATGAAGATCCATTATACATTTTTGATGAAAAGTTTGGTGAAGTTGCGCCTAGCTTGCTGAAGGATTACTGTGTGCCTCATTTGTTTCAAGAAAACTTCTTCGATATTTTAGATGCAGATAAACGACCATCCTACAGGTGGCTCATAATTGGACCTGAGAGATCTGGTGCCTCTTGGCATGTTGATCCTGCTCTTACTAGCGCATGGAATACTCTTCTTTGTGGTCGTAAAAGGTGGGCATTATATCCTCCTGGAAAGGTGCCTTTGGGAGTTACCGTGCATGTTAATGAAGATGATGGAGATGTTAATGTTGAGACACCATCATCACTACAGTGGTGGCTAGACTTTTATCCACTTCTTGCTGATGAGGACAAGCCAATTGAGTGTACACAACTACCTGGAGAGACTATTTATGTTCCAAGTGGATGGTGGCATTGTGTTCTAAATCTGGAAACAACTATAGCTGTCACACAGAATTTTGTAAATTGCAGTAATTTTGAATTTGTATGTTTGGATATGGCACCTGGTTATTGCCACAAAGGAGTTTGCCGTGCTGGATTGCTTGCTCTTGATGATGATAGTTATGAAGATGTTAGACAAAATATACTCTGTAATGAACAGAATTTAAGTTATTCCCATTGGTCAAGGAGAGAGAAGAGAGCCCGGAATCATAAAGATAGAGATATAAATCATGAAAGAACCAAAGATGGTGTATCTAGGAGCTATAATCTATGGAAAGATGGATTTTCTTATGATATAAATTTCTTATCCATGTTTTTGGATAAAGATAGAGACCACTATAGTTCCCCTTGGAACTCAGGCAACAGCATTGGCCAACGAGAACTAAGAGAATGGTTATCCAAACTTTGGATTGGAAAACCAGGAATGAGAGAGCTAATATGGAAGGGGGCATGTATTGCACTGAATGCTGGGAAGTGGTTAGAACGCCTATCTGAAATTTGTTCCTTCCACAATCTGCCCTCTCCCACTGATGATGAAAGGCTTCCTGTTGGTACTGGTAGCAATCCTGTTTATCTTGTGGGAAACTCTGTTGTCAAAATTTTTGCTGAAGATGGGCTGGAAGCTGCACTTTATGGTTTAGGGACAGAGCTTGAGTTTTACAGTCTACTGCATGAAGTCAACTCCCCTCTCAGGAATCATATTCCGAATGTTTTGGGCAGTGGGATCCTTCATCTTGAAGATGGAACTTACACCAATCTGCCTTGGGATGGAAAGGGAGTTCCTGATATCATCATCAAGAGTAATCTAGTCAGGCAGAAGTGCAGGGTTGATGATTTCTCATTTGGTGTATGGGGCAAGAAACAGTTTGAATATAGGAATGCTGGGATGCCAATACATGAATCAGTTAGTTCAGCTGGTCACTCAAATATATGGCCATATATTATAACAAAACGTTGCGAGGGAAAAATTTTTGCTGAGTTAAGAGATAGGGTATCATGGGAAGATATAACAAACCTAGCTTCCTTCTTGGGAGAGCAGTTGCGCCATATTCACCTTTTACAACATCCACCACTGAATATTTCAGCTTTCTCTGATATTGAACAGGAATCAGGTTGGCCAAAGGCTAATGGTTTTGCAAGTGTGCCTCATAAATCAAACATTATAGCAGAGTGGGAAATCTTTTTCAGAACCTTAACAAGAAAGAGGAAGGATGTTTCAAGCCGGTTGACCAAGTGGGGAGATCCGATCCCTAGGAAACTGATAGAGAAAGTTGATGAATATATTCCGCATCAATTTGCGAATCTGTTAAACATAACTGAGAATTCCCCAAGGATTGCTTGTAAACCATGCTCCTGGGTACACTCTGACATTATGGATGATAACATTTACATGGAACCATTATGGGTTTCTACCTCAAGTGAAAATTCTGAAGATGCTGAATTTATAAATGGTTCTGGGGTAGGTAGAGATGTGAAATCATGGCGCCCTAGCCACATCCTTGATTTCAGTAATCTTTCAATAGGCGATCCTATTTTTGATTTGATACCTATTTATTTAGATGTGTTTAGAGGTGATTCTAATCTCCTCAAGCGATTTTTAGAAAGCTACAAGCTACCTTATGCAATTAACATTTTGAAGTATGAGTCAACAGAGAGTGATGATAAGTTTGGCCGGCTTTCATATCTTGCCATGTGCTACTGTATTTTGCATGATGACAATGTCTTGGGAGCCATTTTCAGTATATGGGATAATCTTAGATCGGCAAATTCGTGGGAAGAAGTTGAGCTGACAGTGTGGGGGGAGTTAAACAATTACAAGGGCTTTCCTTGA 2919 0.4046 MENLRAQTAGGYRDRRADALGDLRILPDEILCSILEQLTPRDVARVSCVSSIMYILCNEEPLWMSLYLKGASGLLQYEGSWKKTALHHENLPDKYVEGNGGPLHFDGFNSFFLYRRLYRCHTKLDAFYVDNGNVERRKDVSLEDFCDEYDGKKPVMLTGLADTWPARHKWTTDQLLLNYGDVAFKISQRSSRKTSMKFKDYVSYMKLQHDEDPLYIFDEKFGEVAPSLLKDYCVPHLFQENFFDILDADKRPSYRWLIIGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGKVPLGVTVHVNEDDGDVNVETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNCSNFEFVCLDMAPGYCHKGVCRAGLLALDDDSYEDVRQNILCNEQNLSYSHWSRREKRARNHKDRDINHERTKDGVSRSYNLWKDGFSYDINFLSMFLDKDRDHYSSPWNSGNSIGQRELREWLSKLWIGKPGMRELIWKGACIALNAGKWLERLSEICSFHNLPSPTDDERLPVGTGSNPVYLVGNSVVKIFAEDGLEAALYGLGTELEFYSLLHEVNSPLRNHIPNVLGSGILHLEDGTYTNLPWDGKGVPDIIIKSNLVRQKCRVDDFSFGVWGKKQFEYRNAGMPIHESVSSAGHSNIWPYIITKRCEGKIFAELRDRVSWEDITNLASFLGEQLRHIHLLQHPPLNISAFSDIEQESGWPKANGFASVPHKSNIIAEWEIFFRTLTRKRKDVSSRLTKWGDPIPRKLIEKVDEYIPHQFANLLNITENSPRIACKPCSWVHSDIMDDNIYMEPLWVSTSSENSEDAEFINGSGVGRDVKSWRPSHILDFSNLSIGDPIFDLIPIYLDVFRGDSNLLKRFLESYKLPYAINILKYESTESDDKFGRLSYLAMCYCILHDDNVLGAIFSIWDNLRSANSWEEVELTVWGELNNYKGFP 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0879 972 Pfam F-box-like 25 69 IPR001810 GO:0005515
Dere04g0879 972 SMART cupin_9 214 381 IPR003347 -
Dere04g0879 972 SMART fbox_2 26 66 IPR001810 GO:0005515
Dere04g0879 972 FunFam F-box protein At1g78280 114 371 - -
Dere04g0879 972 ProSiteProfiles JmjC domain profile. 223 386 IPR003347 -
Dere04g0879 972 SUPERFAMILY Clavaminate synthase-like 133 377 - -
Dere04g0879 972 Pfam Cupin-like domain 152 369 IPR041667 -
Dere04g0879 972 CDD F-box_SF 26 58 - -
Dere04g0879 972 SUPERFAMILY Protein kinase-like (PK-like) 674 910 IPR011009 -
Dere04g0879 972 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 20 591 - -
Dere04g0879 972 ProSiteProfiles F-box domain profile. 20 66 IPR001810 GO:0005515
Dere04g0879 972 Gene3D - 16 96 - -
Dere04g0879 972 Gene3D Cupin 118 371 - -
Dere04g0879 972 SUPERFAMILY F-box domain 19 71 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0879 Dere-ChrDere04 9308069 9316162 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0879 8 968 Glycosyltransferase AT1G78280 61.586 0.0 1211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dere04g0879 Cupin_8 1.6e-21 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0879 04 9308069 9316162 Dere04g0879 04 9308069 9316162 ECH