Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0878 ATGGATAGGAACAAGGTTCAAGTGCTTTATGATGCATGCGGTGCTATATTTTCTCAGGAGGGGCTCGCTACTTTTCAGCAAATCCAATATCTGAAAAATCTCCTGGACAGAATTGAAGCTGTTGATGTTGGAATCGATGAGTTTGGGTTGAGTGATTCTCCGATATCAAGCCCAAGGGATGGTGGTAGCAGGGGATTGCTTTGCGGGCAAGCTTTTTCCGAAATAACATACATTCACATCCATGAATGTGACCATTTCTCTATTGGTGTGTTCTGTCTTCCAGCAGGAAAGGTATTTCCACTTCATGATCACCCGGGAATGACAGTGTTAAGCAAACTCCTCTATGGTTCCGTCTACGTCAAAGCTTATGACTGGATCAAATTTGATGTTAGTGGCTGCCAAACATTAGGATTGGCGAGCAGGGTAATAGATGGAATAATGAAAGCACCACAGGAGCCATCCATATTATTTCCAAGAAGTGGCGGCAACATTCATTCTTTCACAGCGTTGACGCCATGTGCTATCCTAGACGTGCTGTCTCCCCCTTACTCTGAAGACTTTGGAAGGCCTTCCACTTACTTCTCAGATTTCCATATACCCTCCCTACCTGGTAATTACACGTGGCTTGAGGAAAAACCACTGCCAGATGACCTGATTGTGAAAGGAGCGCCATATCTTGGACCTCCCATTGTAACCCAATATGATTGTCGTCAATGGGATTTCAGGCAATATTGGGAGTGTCAAACTGGCTTCCGTCTCTGTGAAGTTAAAGACTTTGGGGACATGCCAAAATCCCACACCAACTTCTTTGTCTCACAACTTCTTCTGCTTTTGGAAGATTGTGTTGGCTTGCGAATTGGGCAATACATGGAGCGTTACGAGATTGTCAAAGATATCGGGTCTGGGAATTTCGCTGTAGCTAAGCTGGTTAGGGATAAGTGGACTACAGAGTACTTTGCTGTCAAATTTATTGAGAGAGGCCACAAGATCGATGAGCATGTGCAAAGGGAAATCATGAACCATAGATCATTAAAGCATCCCAATATTGTTAGATTCAAAGAGGTCCTGCTAACGCCAACTCATCTGGCTATAGTGATGGAGTATGCAGCCGGAGGAGAACTCTTTGAGAGGATATGTAGTGCTGGTAGATTTAGTGAGGATGAGGCAAGATTTTTCTTTCAGCAATTGATATCAGGAGTCAGCTACTGTCATTCAATGCAAATCTGTCATAGAGATCTTAAGCTTGAAAACACACTCTTAGATGGCAGCACTGCACCACGTGTCAAAATTTGTGACTTTGGGTACTCGAAGTCATCTGTATTGCATTCACAACCTAAGTCTACCGTAGGAACTCCAGCCTACATTGCACCTGAGGTCCTATCAAAGAAAGAATATGATGGGAAGATAGCAGATGTTTGGTCTTGTGGTGTCACCTTATATGTGATGTTAGTCGGGGCTTATCCCTTTGAAGACCCAGAGGATCCGAGAAACTTTACAAAAACCATCGGGAGGATACTTAGTGTCCAGTACTCAATCCCAGATTATGTACGAGTTTCCATGGAATGTAAACATCTTCTATCACGGATATTTGTGGCTAATCCTGAAAAGAGAATAAGTGTAATGGAAATTAAAAGCCACCCATGGTTTTTGAAGAACTTGCCCATTGAACTAACGGAAGGAGGAAGCTGGCAGAGCAATGATGTAAATAATCCATCACAAAGTGTGGAGGAAGTGCTATCCATAATACAAGAGGCAAGAACCCCTCCCAATGTCCCCACTGTTGGTGACCTTCTTGCTGGAGGCAGCAGCATGGACCTTGATGACTTGGATGCTGATGCAGATCTTGAAGATATAGAGACAAGTGGTGATTTTGTGGGCGCTGTTTAA 1887 0.4367 MDRNKVQVLYDACGAIFSQEGLATFQQIQYLKNLLDRIEAVDVGIDEFGLSDSPISSPRDGGSRGLLCGQAFSEITYIHIHECDHFSIGVFCLPAGKVFPLHDHPGMTVLSKLLYGSVYVKAYDWIKFDVSGCQTLGLASRVIDGIMKAPQEPSILFPRSGGNIHSFTALTPCAILDVLSPPYSEDFGRPSTYFSDFHIPSLPGNYTWLEEKPLPDDLIVKGAPYLGPPIVTQYDCRQWDFRQYWECQTGFRLCEVKDFGDMPKSHTNFFVSQLLLLLEDCVGLRIGQYMERYEIVKDIGSGNFAVAKLVRDKWTTEYFAVKFIERGHKIDEHVQREIMNHRSLKHPNIVRFKEVLLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSTAPRVKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPRNFTKTIGRILSVQYSIPDYVRVSMECKHLLSRIFVANPEKRISVMEIKSHPWFLKNLPIELTEGGSWQSNDVNNPSQSVEEVLSIIQEARTPPNVPTVGDLLAGGSSMDLDDLDADADLEDIETSGDFVGAV 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0878 628 ProSiteProfiles Protein kinase domain profile. 293 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g0878 628 FunFam Serine/threonine-protein kinase SAPK2 290 368 - -
Dere04g0878 628 ProSitePatterns Protein kinases ATP-binding region signature. 299 322 IPR017441 GO:0005524
Dere04g0878 628 PANTHER SERINE/THREONINE KINASE 291 559 - -
Dere04g0878 628 CDD cupin_ADO 84 184 - -
Dere04g0878 628 SMART serkin_6 293 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g0878 628 SUPERFAMILY Protein kinase-like (PK-like) 284 559 IPR011009 -
Dere04g0878 628 Pfam PCO_ADO 34 230 IPR012864 GO:0016702
Dere04g0878 628 Gene3D Transferase(Phosphotransferase) domain 1 369 557 - -
Dere04g0878 628 FunFam Serine/threonine-protein kinase SRK2E 369 557 - -
Dere04g0878 628 SUPERFAMILY RmlC-like cupins 4 194 IPR011051 -
Dere04g0878 628 Pfam Protein kinase domain 293 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g0878 628 CDD STKc_SnRK2 292 548 - -
Dere04g0878 628 Gene3D Jelly Rolls 67 198 IPR014710 -
Dere04g0878 628 Gene3D Phosphorylase Kinase; domain 1 280 368 - -
Dere04g0878 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0878 Dere-ChrDere04 9297287 9302920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0878 292 568 CBL-interacting serine-threonine protein kinases AT4G24400 42.657 6.11e-66 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Dere04g0878 Pkinase 3.5e-71 CL0016