Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0870 ATGGTGCTGCTTCGCTTTCTCAGCTTTCCTTCGACAGCTAATTTCTCCAAAGAACATCAACTCTGCCCACTCTTGTCTCTTCAGAATTCTCACCATCGATCTAACTATTCCATCAGCAACCTCTCTTATTGTCACCCACCCTCCTCGTTTCATTTTCTAAGTCTGTCCCTTGCGCATACCCCAAACTTTAGAACCAAAGAAAGTGCTCATTTTATACCTAAATTTGCCTCTGCCTCCCAAGAACAAGCGCTTGCTTCCTCTCCTTCAAATGTTTCGGATGAGAGCCAAGAAACGGGGGCACAAACTGAAGAATTTTCTCGAACCAGATTGCTGGCTCAGAACGTACCTTGGACTAGTACTCCTGAAGACATTCGTTCATTGTTCGAGATGCATGGGAGAGTCCTAGACGTTGAGTTGTCAATGTACAATAAGACTAGAAACAGGGGTTTGGCATTCGTCGAAATGGGTTCAGCAGAAGAGGCTCTTGCGGCTCTCAGTAGTCTCGAATCGTATGAATTTGAGGGGCGCATACTAAAACTTGCATATGCAAGGCCCAAAATGAAGAAAGCTCCACCTCCTGTGCAACAGAAGACAGTGACATTTAATATATTTGTTGCAAATTTGTCCTATGAAGCGAGGTCTAAAGATCTCAGGGAGTTTTTTGATTCAGGAAGCGGTAGTGTTGTTTCTGCAGAGGTGATATTCCATGATAACCCTAGAAGGTCCTCTGGTTATGGATTTGTGTCCTTCAAGTCCAAGAAAGAAGCTGAGGCTGCTCTTTCTGAGTTCCAAGGGAAGATTTTTATGGGAAGGCCAATCAGAGTGGCACGTAGTAAGCAATTTGTAAAACAACCGGTAGAGGATAGTGCAAGGTCTGAAGACACATCTTCTGAGATGAGCGTGAATGGGGCAGAAGCAGATAAAGCTGATTGA 933 0.4437 MVLLRFLSFPSTANFSKEHQLCPLLSLQNSHHRSNYSISNLSYCHPPSSFHFLSLSLAHTPNFRTKESAHFIPKFASASQEQALASSPSNVSDESQETGAQTEEFSRTRLLAQNVPWTSTPEDIRSLFEMHGRVLDVELSMYNKTRNRGLAFVEMGSAEEALAALSSLESYEFEGRILKLAYARPKMKKAPPPVQQKTVTFNIFVANLSYEARSKDLREFFDSGSGSVVSAEVIFHDNPRRSSGYGFVSFKSKKEAEAALSEFQGKIFMGRPIRVARSKQFVKQPVEDSARSEDTSSEMSVNGAEADKAD 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0870 310 SUPERFAMILY RNA-binding domain, RBD 192 283 IPR035979 GO:0003676
Dere04g0870 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 280 IPR000504 GO:0003723
Dere04g0870 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 178 IPR000504 GO:0003723
Dere04g0870 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 274 IPR000504 GO:0003723
Dere04g0870 310 SUPERFAMILY RNA-binding domain, RBD 95 193 IPR035979 GO:0003676
Dere04g0870 310 SMART rrm1_1 109 181 IPR000504 GO:0003723
Dere04g0870 310 SMART rrm1_1 202 276 IPR000504 GO:0003723
Dere04g0870 310 MobiDBLite consensus disorder prediction 280 310 - -
Dere04g0870 310 PANTHER OS02G0815200 PROTEIN 37 279 - -
Dere04g0870 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
Dere04g0870 310 Gene3D - 64 188 IPR012677 -
Dere04g0870 310 Gene3D - 189 288 IPR012677 -
Dere04g0870 310 MobiDBLite consensus disorder prediction 83 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0870 Dere-ChrDere04 8952963 8954487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0870 107 289 Eukaryotic Initiation Factors Gene Family AT3G16380 26.289 1.93e-09 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0870 04 8952963 8954487 Dere04g0870 04 8952963 8954487 ECH