Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0869 ATGGCCAGGATACACAGAAAGCTCTTTCCTGCACCAACTACAACAAACCAAACCCAAGAATGTCCTGATTTTTGTGACCCAGCTTGCCCCTACAACTGCTACACTTATCCAGACTACTACTTTCCACCACCACCACCACCACCACCATCTATAACATCTCCAAGTAATCAGATCTCGTCCTACTTGATCATCCTTGCTTCACTATTCACAGTCATATTCATTCTTGTTGGTTTCTACGTCATCAAAGTAAAGTGCTATTCTGATTGGTTGGGGTGGAGAAATAATGGAGACGGTACCTCCCTATCAGACGATTCTGAGGATGAGTTTGTTCATGAGAACCAAGCTGATCACCCTATCTGGTTGATCACCACCGTTGGTTTACAACAGTCAATCATAAATTCCATTGCAGTTTGTAAGTATAGAAGGGGTGAGGGTTTGATTGAGGGAACGGAGTGTTCAGTGTGCTTGAATGAATTCCAGGAAGACGAAACCTTAAGACTGTTGCCAAAGTGCAACCATGCCTTTCACATCCCCTGTATTGACACATGGTTGCGGTCTCATATTAATTGTCCTCTTTGTCGTGCTGGTATAGTGTCCAACAATGTCGGTCCTGATGCTGCCATCTCAAATTTGGGTTCAATGGAGGAAAACTCTAACGTCGTGAGAGGAAATGAAGACACCCAGGTGGAAGGGAATGATGGTGAATTAGCCAGTGGGGTATCAGAAAACAGGGTGGGAATAAGAGAAGCAGGGGAAGCCCAAGAGTTCACTCATGAATCAGTTTTGAAGGAGCGTCTGAATGTTGATGAGAATGAGCAGGTTGTAGATGAAATACAAAGAGAGATCAGTTCTGTTTCAGTGGATTCTCCCGTTGATCATATAGAGGATAATTCAGAACGACACCCGGCAAATCTTCTGAAGAAAGATGGTGATTATTCTTATTCAACACCGTTTAAATCAGCGCGTCGTTCCTCAATTGCACAATGTCTACACTTAAGCCCAGTTTCGATGAAAAGGTCAGTCTCCTGCAGCGCAAGGATTGTATCTACGAGAGGCTTCAGGAGTCTTAATTCAAGCCTTCCTATTAAAATTTTCTATTAA 1101 0.4332 MARIHRKLFPAPTTTNQTQECPDFCDPACPYNCYTYPDYYFPPPPPPPPSITSPSNQISSYLIILASLFTVIFILVGFYVIKVKCYSDWLGWRNNGDGTSLSDDSEDEFVHENQADHPIWLITTVGLQQSIINSIAVCKYRRGEGLIEGTECSVCLNEFQEDETLRLLPKCNHAFHIPCIDTWLRSHINCPLCRAGIVSNNVGPDAAISNLGSMEENSNVVRGNEDTQVEGNDGELASGVSENRVGIREAGEAQEFTHESVLKERLNVDENEQVVDEIQREISSVSVDSPVDHIEDNSERHPANLLKKDGDYSYSTPFKSARRSSIAQCLHLSPVSMKRSVSCSARIVSTRGFRSLNSSLPIKIFY 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0869 366 SMART ring_2 152 193 IPR001841 -
Dere04g0869 366 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Dere04g0869 366 Pfam Ring finger domain 151 194 IPR001841 -
Dere04g0869 366 PANTHER RING-H2 FINGER PROTEIN ATL16 43 291 IPR044600 GO:0016567|GO:0016740
Dere04g0869 366 CDD RING-H2_EL5-like 151 194 - -
Dere04g0869 366 SUPERFAMILY RING/U-box 145 199 - -
Dere04g0869 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 202 IPR013083 -
Dere04g0869 366 FunFam RING-H2 finger protein ATL54 127 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0869 Dere-ChrDere04 8949216 8950316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0869 1 198 C3H Transcription Factor Family AT1G72220 51.786 8.09e-66 212