Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0868 ATGGCACTTGAGGCTGTAGTTTTCCCACAAGATCCCTTCACGTATAGTTGCTACAGGGACTTGTACGCCTTAGCAGGAGCTTGGAACCACGAAGGCTATGGTTTCCAAGCAGAAGATGAGAAGGCCCTTGTTGGACTCATCAACAATGACATAGAGCAGAAAGATCAGCATGCAACTTGGGATTCTAACTCCTCCCCTGAGGCCTGCACCGCCGACCAATCAGTGTCGCCGCCATGCCCTGCTTCCTCGGGTCGGCGCAAACGACGTCGCACCAAGACCACCAAGAACAAGGAGGAAATAGAGAACCAGAGGATGACTCACATTGCGGTGGAGCGCAATCGACGAAGACAGATGAATGACTACCTGGCTGTGCTCCGATCCTTGATGCCTCCTTCTTATGTTCAAAGGGGGGACCAAGCGTCTATAATAGGAGGAGCCATTAACTTCGTGAAGGAGCTAGAGCAGCTATTGCAGTCTATGGAGGGACAAAAGAAAACGAAGCAACAAGAGCAAGAGTGTGGGATGAGTAGCTCACCCTTTTCTGAGTTCTTCACCTTCCCACAGTACACCACAAATGCAAATCAGAGCAACACATCCTCCCACCAGTGGGCCGTAGCAGACATAGAGGTCACCATGGTAGACACTCATGCCAACCTCAAGATACTCTCCAAGAAACGACCAAACCAGCTTACGAAGATGGTCCATGGCCTCCAAACTCTCAGGCTCAGCGTTCTCCACCTTAACGTTACAACTCTCAATGACATGGTCCTTTACTCTGTTAGTCTAAAGGTTGAAGAAGGATGTGAACTGAACACGGCGGACGAAATCGCTGCCGCTGTGAATCAACTCTTGCGCAGAATCCAAGAGGAAGCACCTTTCAGCTAA 885 0.5017 MALEAVVFPQDPFTYSCYRDLYALAGAWNHEGYGFQAEDEKALVGLINNDIEQKDQHATWDSNSSPEACTADQSVSPPCPASSGRRKRRRTKTTKNKEEIENQRMTHIAVERNRRRQMNDYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKKTKQQEQECGMSSSPFSEFFTFPQYTTNANQSNTSSHQWAVADIEVTMVDTHANLKILSKKRPNQLTKMVHGLQTLRLSVLHLNVTTLNDMVLYSVSLKVEEGCELNTADEIAAAVNQLLRRIQEEAPFS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0868 294 SMART finulus 108 159 IPR011598 GO:0046983
Dere04g0868 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 102 173 IPR036638 GO:0046983
Dere04g0868 294 MobiDBLite consensus disorder prediction 58 80 - -
Dere04g0868 294 PANTHER MAX DIMERIZATION, MAD 62 291 - -
Dere04g0868 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 102 153 IPR011598 GO:0046983
Dere04g0868 294 MobiDBLite consensus disorder prediction 56 103 - -
Dere04g0868 294 Coils Coil 150 170 - -
Dere04g0868 294 Pfam Helix-loop-helix DNA-binding domain 103 154 IPR011598 GO:0046983
Dere04g0868 294 FunFam Basic helix-loop-helix transcription factor 93 168 - -
Dere04g0868 294 Gene3D - 92 171 IPR036638 GO:0046983
Dere04g0868 294 CDD bHLH_AtFAMA_like 105 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0868 Dere-ChrDere04 8943892 8945028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0868 1 264 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 51.020 8.31e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere04g0868 HLH 3.3e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2349 05 33816200 33817332 Dere04g0868 04 8943892 8945028 CCT
Dere04g0868 04 8943892 8945028 Dere04g0868 04 8943892 8945028 ECH