Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0867 ATGGCTATCATCATGGGCGTTGTGGTCATTGTGCTCTTCATCTCCGGCTTTCTTTCCCTCTACACTCGCCAATGCGCGTACCAAAGACGAACCCGAACCCGAATCCGAGGCCGCCTAGACCTTGCTTTTCCCATCGGATCCACCCGACGCACTTCCCATACGCAGCCTCGCGGTGTTGATCCGGATGTCATCCGGACCTTCCCCACTTTCCTCTACTGCACGGTGAAGGACAGAGGCACCCTGGCATGCGCGGTGTGCTTAAACGAGTACGAAGACGACGAAACACTGCGTTTGATCCCCAAATGCAGCCACGTGTTCCATCCCGATTGCATCAACGCATGGTTGGCGTCTCACTCAACGTGCCCGGTGTGCCGGGCCAACCTGCTGCTTCCAGTGCCAGCACAGGGGGATACGCGCTTCGTAGGCCTTCATATTCCAGATGCCGCCCAGAATGAAGGGTCGGTTGGAGAATCAAACAATAATGACAATCACGACAGAAACACGGAATCTCCGAAGGTTAATTTGCTTAGTCGGAGTGGGACGAGGAATCAGAACCGTTGTCCGAGTCGATCAAGGTCAACGGGGTTCCTAATGGCCATATTGTTTCCGCGGTCTCAGTGGATGGGTCATACGGACACAGTGGTTGAACCCGGTGAGGACTGGGATAGATTCACGCTGAGATTGGAAGAACTGAACTCATCCTCCACGCTCAAACGTACCAAGAGTTGCGTGACATTTACGAGAATGAGCAGTGGGAGGAAAGGTTATAGGACAAGAAGCGTGGCTAGCGCACGCGGGAGAAACTACTTGCTGTACGAACTCTTAGCCAACAACCCACCACTTCATCTAATGTATGAATCTGAAGCATCTTCTCATTGCGTATGCCCCAGTTGA 894 0.5313 MAIIMGVVVIVLFISGFLSLYTRQCAYQRRTRTRIRGRLDLAFPIGSTRRTSHTQPRGVDPDVIRTFPTFLYCTVKDRGTLACAVCLNEYEDDETLRLIPKCSHVFHPDCINAWLASHSTCPVCRANLLLPVPAQGDTRFVGLHIPDAAQNEGSVGESNNNDNHDRNTESPKVNLLSRSGTRNQNRCPSRSRSTGFLMAILFPRSQWMGHTDTVVEPGEDWDRFTLRLEELNSSSTLKRTKSCVTFTRMSSGRKGYRTRSVASARGRNYLLYELLANNPPLHLMYESEASSHCVCPS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0867 297 FunFam E3 ubiquitin-protein ligase ATL6 47 131 - -
Dere04g0867 297 MobiDBLite consensus disorder prediction 172 191 - -
Dere04g0867 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 129 IPR013083 -
Dere04g0867 297 MobiDBLite consensus disorder prediction 150 191 - -
Dere04g0867 297 SMART ring_2 83 124 IPR001841 -
Dere04g0867 297 Pfam Ring finger domain 82 125 IPR001841 -
Dere04g0867 297 CDD RING-H2_EL5-like 83 125 - -
Dere04g0867 297 SUPERFAMILY RING/U-box 63 140 - -
Dere04g0867 297 PANTHER RING FINGER DOMAIN-CONTAINING 5 135 - -
Dere04g0867 297 ProSiteProfiles Zinc finger RING-type profile. 83 125 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0867 Dere-ChrDere04 8929956 8930849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0867 1 255 Rapid Response to Elicitors AT3G05200 40.075 9.03e-47 160