Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0866 ATGACAATCCAGAGGGACACTCTTGCTCCTGCTACTACCATTCTCACTCTCTGCAATTCTAATCACCGTCATGGCCTCCGATGGCTTGCCCTGTTTCTACTTGTCTTATCGGCTACCGCACAGCTCCCAAACTCGCTGCCGCCACCCCAACCCCCACTGCCAACGGACCCATTTTCCAAACTCAGGTTCGACAGAAACATGGCCATCATCATGGTGATCCTGGTGCTCGTGTTCTTCATACTGGGCTTTCTATCCGTCTACACTCGCCAATGTGCAGAGCAGCGAATCAGAGGAAGACTCGACCTCACACTCCCAATCGGCGTCAGCGGCCGGCGATCCCGTGGCTTGGACCCTGAGATCATCGACACGTTTCCCACGTTCGTATACTCCACGGTGAAGGGGCTTAAGATGGGGAGGAGCACGCTGGAATGCGCCGTCTGCTTAAACGAGTTCGAAGACGACGAAACTCTGCGTTTGATTCCCAAATGCAGCCACGTGTTTCACCCTGATTGCATCGATATTTGGCTGTCTTCTCACTCCACCTGCCCCCTTTGCCGTGCCAACCTCATTCCAAGATCCGGAGACACCTCTTTCGTCGCCATTCAGATCCCGAATTCAGATGTCCAGTCCTCAGAACCCGATCCACGACCCGATTCCCAGGAACATGACTTCCCCCAAGACAATAGTAACACGGTGGTGCCAGAGTCTCCCAATCTGAGCCGATGTCAGACAACGAATCGGAACCATACTCCTATGTCAAGGTCGACGGGGTTTCGAATCGCCGGCTTCCTCCCGCGTTCTCACTCAACCGGTCACTCCTTGCAGGTTCCACCCAGCGGGAATTGGGAAAGATTCACTCTGAGATTACCGGAGGTGACACGAAAACAGTTATTAGATCGTACGAATAGTTGCGTAGCATTTACAAGAGAAAGCAGTGAGAGGAGGGGTTACAGGACAAGAAGCGGACGTGCCAGGAACTATTTACAGTATCAGCGGTTCGGCAACGAGGATCGGCCGGAGAATTGGGAGTTCACGGTGAGGCCGCCGTTTTTGACCAGGACTGGTTCGATGGCGTCCAACAAGGCGCCGGTAGGTCGATCAGAGGTAGCTATGGACGACGTTGGCGAACAATCATCTGATCCACTGTGTCCAGGAAACAAAGATTACGCGTCAGGACTTTAG 1182 0.5347 MTIQRDTLAPATTILTLCNSNHRHGLRWLALFLLVLSATAQLPNSLPPPQPPLPTDPFSKLRFDRNMAIIMVILVLVFFILGFLSVYTRQCAEQRIRGRLDLTLPIGVSGRRSRGLDPEIIDTFPTFVYSTVKGLKMGRSTLECAVCLNEFEDDETLRLIPKCSHVFHPDCIDIWLSSHSTCPLCRANLIPRSGDTSFVAIQIPNSDVQSSEPDPRPDSQEHDFPQDNSNTVVPESPNLSRCQTTNRNHTPMSRSTGFRIAGFLPRSHSTGHSLQVPPSGNWERFTLRLPEVTRKQLLDRTNSCVAFTRESSERRGYRTRSGRARNYLQYQRFGNEDRPENWEFTVRPPFLTRTGSMASNKAPVGRSEVAMDDVGEQSSDPLCPGNKDYASGL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0866 393 MobiDBLite consensus disorder prediction 224 255 - -
Dere04g0866 393 FunFam E3 ubiquitin-protein ligase ATL6 107 192 - -
Dere04g0866 393 Pfam Ring finger domain 143 186 IPR001841 -
Dere04g0866 393 SMART ring_2 144 185 IPR001841 -
Dere04g0866 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 191 IPR013083 -
Dere04g0866 393 CDD RING-H2_EL5-like 143 186 - -
Dere04g0866 393 SUPERFAMILY RING/U-box 140 192 - -
Dere04g0866 393 MobiDBLite consensus disorder prediction 353 393 - -
Dere04g0866 393 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Dere04g0866 393 MobiDBLite consensus disorder prediction 206 255 - -
Dere04g0866 393 PANTHER RING FINGER DOMAIN-CONTAINING 55 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0866 Dere-ChrDere04 8917940 8919121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0866 31 354 Rapid Response to Elicitors AT3G05200 39.466 1.84e-60 199