Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0855 ATGGAATTTGAGGAGCAGGATCAGGAGCACGAAGAGACAGAGGAAGAGATGGGAATTCCGGTGCCGCCGCCGCTGGGTTACGACTCGGGTCGGTCCAAAATGGGTGCAGCCGTCGGAACCGAGGAAGGTGCACCCACCATGACAGCTGGCAGGAAAGGCGGCTCAACGGGAACAGTGAGGTACAGAGAGTGTCAAAAGAATCACGCCGTCAGCATCGGTGGCCACGCGGTTGACGGTTGCGGTGAGTTTCTAGCGGCGGGGGAGGAAGGCACGCTCGACGCCCTCAAATGCGCGGCCTGTAACTGTCACCGCAACTTCCACCGAAAGGAGATCGACGGAGAAATGAGCTCCTATCACCTGCAGCAGCCGCCACAGCCCCAGCCACACCACCACCAGTACCACCATCAGTTTCCCCCTTACTACCGTGCGCCACCGCCGCCAGGCGCAGGATACCTCCATCCCCATTTGGCAACTCTGCCGATGGCGCATCACCGGCCATTGGCTCTACCCGCCGCAGCATCCGGCGGGGGACTGAGTAGAGAAGAGGAAGACATGTCAAATCCGAGTAGCAGCGGAGGCGGGGGGTTCGGTGGTGGAGGGAGCGGTAGTGAAAGGAAGAAACGGTTCAGAACGAAGTTCACGCAGGAGCAGAAGGAGAAGATGCTGGCATTTTCGGAAAAGCTGGGTTGGAGAATCCAGAAGCATGACGAAGCTGCGGTGGAGCAATTCTGTGTGGAGACTGGTGTCAGAAGACAAGTACTCAAGGTTTGGATGCATAATAACAAGCATACTCTTGGTAAGAAACCCTAA 810 0.5753 MEFEEQDQEHEETEEEMGIPVPPPLGYDSGRSKMGAAVGTEEGAPTMTAGRKGGSTGTVRYRECQKNHAVSIGGHAVDGCGEFLAAGEEGTLDALKCAACNCHRNFHRKEIDGEMSSYHLQQPPQPQPHHHQYHHQFPPYYRAPPPPGAGYLHPHLATLPMAHHRPLALPAAASGGGLSREEEDMSNPSSSGGGGFGGGGSGSERKKRFRTKFTQEQKEKMLAFSEKLGWRIQKHDEAAVEQFCVETGVRRQVLKVWMHNNKHTLGKKP 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0855 269 Gene3D - 195 266 - -
Dere04g0855 269 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 60 111 IPR006456 -
Dere04g0855 269 MobiDBLite consensus disorder prediction 118 154 - -
Dere04g0855 269 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 265 - -
Dere04g0855 269 MobiDBLite consensus disorder prediction 170 207 - -
Dere04g0855 269 FunFam Zinc-finger homeodomain protein 2 199 267 - -
Dere04g0855 269 NCBIfam homeobox domain, ZF-HD class 206 262 IPR006455 -
Dere04g0855 269 Pfam ZF-HD protein dimerisation region 59 111 IPR006456 -
Dere04g0855 269 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 61 110 IPR006456 -
Dere04g0855 269 MobiDBLite consensus disorder prediction 1 56 - -
Dere04g0855 269 SUPERFAMILY Homeodomain-like 192 267 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0855 Dere-ChrDere04 8762842 8763651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0855 1 265 ZF-HD Transcription Factor Family AT4G24660 50.562 1.87e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dere04g0855 ZF-HD_dimer 3.2e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2329 05 33646085 33648648 Dere04g0855 04 8762842 8763651 CCT
Dere04g0855 04 8762842 8763651 Dere04g0855 04 8762842 8763651 ECH