Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0852 ATGGGTTATCTCTCTTGTAATGCTAAGTCTGCAATCGCCACCTGCCAATGCGATCCCCACTATTGGGATGGAAGCACTGCCTCAAGTAAAAAAAGAAACCATAAGCATAATAAGAAGCTCCCGGAGATCAGAAAGTTTGAGTATTCCGACCTGGTGGCGGCCACAAATGGGTTCTCCGCAGATTGCTTCTTAGGCAAAGGCAGCCACGGCAGCGTCTACAGAGCCACTCTCGACGACGGCAATCTCATCGCCGCCGTCAAGACAACCAAGTTCAAAAAGCCATCCGCCACGAGCCTCCGCTGCCACTCCACCAGGTGTACAGGTTGTACCCGCTGTACCAGCCCCGCTGAGAACGAGATCGAGATTCTTTCCAGAGTTCGAAGCCCTCGCGGCCTCGTCAACCTCATTGGCTTCTGTACCGACTCAGACTACAACAAATTGATTGTCGTCCAGTACATGCCCAACGGTTCCCTCTACGATGTCTTGCACTCCACATCTAAACCCCCCGGTTGGGCCCGGCGGGTCCGGTTCGCCCTCCAGGTCGCTAAAGCGGTTCGGGCGCTCCACTCTTCCAACCCGCCCGTGATTCACCGGGACATCAAGTCTTCAAACGTTTTGATCGATGAGGATTGGAACGCGAGACTGGGCGATTTCGGCCTCGCTCTCAGGGGACACGTGGAGGATGTTCGCGTAAAGTGCACACCGCCGGCGGGGACTTTAGGGTATCTGGACCCGTGCTATCTTGCGCCGGCGGATCTAAGCGCGAAGAGTGACGTGTTCAGCTTTGGGATCTTGTTGTTGGAGATAATCAGTGGTAGGAACGCCATTGATGTGAAATACAGCCCGCCATCGGTGGTGGACTGGGCGGTGCCGCTGATAAAACAGGGTGAATATCTCGAAATCTGTGACCTGCGGGTTGAAACGCCGTCAGACCCGACGGCGATACAACAGCTGGCGGTGTTGGCGGCGAGGTGCATTAGGCCGAAGGCGGAGAAGCGGCCGCCGATGTCGGAGGTAGTGGAGTGTTTGAAACAAGCGAGGAAGAGGATTCAAGGGTCGCCTATATGGAGGAGTGTGAAGCGGGGGTTGGCGCGTGTGGAGAAAGCGCAGGCGTTGAGGAGGTGGGAAGTGTGTGATGGGAGCGAAGAAGCAGGGAGCGTAGTAAAGGTTGGAAGTAGAAGGAACGGGAAAGTATCGAATGTCGGGGTCGTAGAGTTTGAGATGAATGAAAGTAGAAATATTCAGGTGGTAAGGTCGAAATCGATTGGCTGTGAGGGTGAGATGAAAATGCAGTGTCTTCGAAATCCAAATCAGCAAGTTGGGTTACTTGTAAGAAGGAAGAAGGGAGGGGTGAGGCTGAGCAAGTCGAGGTCTACGGGGGTTTTGCGCAGTCCACGGCTTTTACATGATGGGGCTACTGTGTTAGAAAAGGGCTGGGGTCATTACATTAATCGTCCATCTCATGCCGCAGACATAGCTAGTTTGGAGGAGAAAATTCTTGAAAAACCACTGGTTAATGCTATTCAATCACGCTGA 1536 0.5345 MGYLSCNAKSAIATCQCDPHYWDGSTASSKKRNHKHNKKLPEIRKFEYSDLVAATNGFSADCFLGKGSHGSVYRATLDDGNLIAAVKTTKFKKPSATSLRCHSTRCTGCTRCTSPAENEIEILSRVRSPRGLVNLIGFCTDSDYNKLIVVQYMPNGSLYDVLHSTSKPPGWARRVRFALQVAKAVRALHSSNPPVIHRDIKSSNVLIDEDWNARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPADLSAKSDVFSFGILLLEIISGRNAIDVKYSPPSVVDWAVPLIKQGEYLEICDLRVETPSDPTAIQQLAVLAARCIRPKAEKRPPMSEVVECLKQARKRIQGSPIWRSVKRGLARVEKAQALRRWEVCDGSEEAGSVVKVGSRRNGKVSNVGVVEFEMNESRNIQVVRSKSIGCEGEMKMQCLRNPNQQVGLLVRRKKGGVRLSKSRSTGVLRSPRLLHDGATVLEKGWGHYINRPSHAADIASLEEKILEKPLVNAIQSR 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0852 511 SUPERFAMILY Protein kinase-like (PK-like) 41 347 IPR011009 -
Dere04g0852 511 ProSitePatterns Protein kinases ATP-binding region signature. 64 87 IPR017441 GO:0005524
Dere04g0852 511 Gene3D Phosphorylase Kinase; domain 1 28 152 - -
Dere04g0852 511 Pfam Protein tyrosine and serine/threonine kinase 63 343 IPR001245 GO:0004672|GO:0006468
Dere04g0852 511 PANTHER OS01G0253100 PROTEIN 31 349 - -
Dere04g0852 511 SMART serkin_6 58 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g0852 511 Gene3D Transferase(Phosphotransferase) domain 1 153 356 - -
Dere04g0852 511 ProSiteProfiles Protein kinase domain profile. 58 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g0852 511 FunFam Serine/threonine-protein kinase-like protein 153 356 - -
Dere04g0852 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0852 Dere-ChrDere04 8755572 8757107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0852 15 386 Receptor kinase-like Gene Family AT3G59420 36.616 3.75e-66 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Dere04g0852 PK_Tyr_Ser-Thr 2.9e-35 CL0016