Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0830 ATGCTTCCGTTTCAGAGTCTCAGAGTCTCAGATCATAGTGGTAATTATCTTCAAGAACCGAGCTCTCTGATCAAACCAATGGAATTGGACGGTGGGAGGTCGACTCTGAGCTCTGCATCAAAGTCGGAGAGGAGATCAGATGAAGCATGCAAGAGTCACAGGGAAGCTGAGAGGAGACGCCGGCAGCGAATCAACGCCCACCTCTCCACCCTACGCTCTCTCCTCCCGAACGCTGCTAAGTCAGATAAGGCCTCGTTGCTGGCGGAAGTGGTCCAACGCGTGAAAGAGCTGAGGAAACAGGCGGATGACGTGGCGCGTTGTCACGACGGTTACTTGTCGTCCAGCAGCAGCAACGCCGGCGAATCCGGGTCGGATCAGGCCGTAGAAACGGACCCGTGGCCGTTCCCGGGAGAGTCGGACGATGCTACTCTGAGCTATTGCGAGAGTGCAGGTGAACCGAACATGTTGAAAGCCACGTTGAGCTGCGAGGACCGGCCCAACCTGAACCGGGAGCTAACAGAGGCAATACGGTCGGTCAGGGCAAAGGCGGTTCGGGCTGAGATGATGACGTTTGGTGGGCGGACCAAGAGTGTCGTTATAATGCAATGGCCTGGCGAGGGAGAAGAAGAGGTTGGCGCACTGAAACGAGCTCTGAAGGCTGTGGTAGAGAATAGGGGTTTAGTGAGTTCTGGGCTGGGCCAGACGGTGATGGGCTATAAACGGGCCCGAGAAATTTGCATTTCACCTACGGCGCCTGCTTCCACCTTGTTGTCGAGGAAGGCAAACATGGAATAA 795 0.5572 MLPFQSLRVSDHSGNYLQEPSSLIKPMELDGGRSTLSSASKSERRSDEACKSHREAERRRRQRINAHLSTLRSLLPNAAKSDKASLLAEVVQRVKELRKQADDVARCHDGYLSSSSSNAGESGSDQAVETDPWPFPGESDDATLSYCESAGEPNMLKATLSCEDRPNLNRELTEAIRSVRAKAVRAEMMTFGGRTKSVVIMQWPGEGEEEVGALKRALKAVVENRGLVSSGLGQTVMGYKRAREICISPTAPASTLLSRKANME 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0830 264 Gene3D - 41 108 IPR036638 GO:0046983
Dere04g0830 264 MobiDBLite consensus disorder prediction 109 135 - -
Dere04g0830 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Dere04g0830 264 SMART finulus 54 103 IPR011598 GO:0046983
Dere04g0830 264 Pfam Helix-loop-helix DNA-binding domain 50 97 IPR011598 GO:0046983
Dere04g0830 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 108 IPR036638 GO:0046983
Dere04g0830 264 MobiDBLite consensus disorder prediction 40 62 - -
Dere04g0830 264 Coils Coil 263 264 - -
Dere04g0830 264 PANTHER TRANSCRIPTION FACTOR BHLH30 28 243 IPR045847 GO:0003700|GO:0006355
Dere04g0830 264 MobiDBLite consensus disorder prediction 110 125 - -
Dere04g0830 264 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0830 Dere-ChrDere04 8538331 8539220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0830 13 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 36.161 5.56e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere04g0830 HLH 1.9e-10 No_clan