Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0826 ATGGCGAGGGAGAAGATCAAGATCAAGAAAATCGACAACGTAACGGCGAGGCAAGTGACATTCTCAAAGAGGAGGCGAGGGCTCATCAAGAAAGCTGAAGAGCTTTCTGTGCTTTGCGATGCTGAGGTTGGTCTCATTATTTTCTCTGCTACTGGGAAGCTCTTTGAACATGCCAGTTCCAGTGTAAAGGACGTCATCACAAGGTATGATCTGCATTTTCAAGACATCAACCAATTGGACAGACATTCTCTACATCAGCCGCAGATGAAAGGTGAGGATCTTGATGGACTAAACGTAGATGATTTGCAGCGGCTAGAGAAAATGCTTGATCAAGGACTCAGTCGCGTGATAGAGACTAAGGAGAAGCGGATTATGGGTGAAATTGCTGGACTTCAGAAAAAGCATGGGGCACAGATGGCTGTCGCGTGTAAAGGAAAAAAACTTATGATGTTGAACTCAGATATGGGCATACAGGAAGAAGGTGTCTCATCAGAATCCATGAATAATGTCTGCAGCTGCAACAGTGGCCCTCCTCTCGAGGATGATTCTTCTGACACGTCTCTCAAGTTAGGGTAA 576 0.4549 MAREKIKIKKIDNVTARQVTFSKRRRGLIKKAEELSVLCDAEVGLIIFSATGKLFEHASSSVKDVITRYDLHFQDINQLDRHSLHQPQMKGEDLDGLNVDDLQRLEKMLDQGLSRVIETKEKRIMGEIAGLQKKHGAQMAVACKGKKLMMLNSDMGIQEEGVSSESMNNVCSCNSGPPLEDDSSDTSLKLG 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0826 191 ProSiteProfiles K-box domain profile. 59 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere04g0826 191 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Dere04g0826 191 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 149 - -
Dere04g0826 191 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Dere04g0826 191 CDD MADS_MEF2_like 2 69 IPR033896 GO:0000977|GO:0045944
Dere04g0826 191 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere04g0826 191 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere04g0826 191 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere04g0826 191 FunFam Transcription factor, MADS-box 13 83 - -
Dere04g0826 191 SUPERFAMILY SRF-like 1 70 IPR036879 GO:0003677|GO:0046983
Dere04g0826 191 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere04g0826 191 MobiDBLite consensus disorder prediction 161 191 - -
Dere04g0826 191 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere04g0826 191 Pfam K-box region 78 136 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0826 Dere-ChrDere04 8482507 8486628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0826 1 191 MADS-box Gene Family AT4G24540 52.535 6.46e-62 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere04g0826 K-box 9.9e-11 No_clan