Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0813 ATGTACGGACACATCTCATCTATGAATGTCACTAATCGGATCAGCACTGGCGAAGACGACGAGGGCGTTGGCATTGGCGCCGAGTCCATTGACAATCACCACATCCATTACGAAACGCAAGCTCTCGAAGATGGTAGTGGTGGAGTTGGTGGTGTAGTGGAGGATGTTAACTCCGATACCGTATATGTTTCCGGCAGTGGTTCTGAAATGTCCCTCCAACACGACGATTCTAGCCAACTTACGCTGTCATTTCGTGGCCAAGTATACGTTTTTGACTCTGTTACACCTGATAAGGTTCAAGCGGTTTTGTTACTGTTGGGTGGATGTGAAATTCCATCGAGTTCGCAATGTGAGGATATAACAACTCAAAATCAGAGGGGTGCAGTGGAATACCCTGGAAGATGTAGTCAACCACAGCGAGCAGCCTCTTTAAGTAGGTTCCGTCAGAAGAGAAAAGAACGATGCTTTGATAAGAAAGTTAGATATAGCGTACGTCAAGAAGTTGCCCTCAGGATGCACCGTAATAAGGGTCAATTTACTTCGTCTAAGAAACAAGATGGAGCTAATAGTTGCGGTACAGTGCAGGAGTCAGGGCAGGATGACAGTCAATCAGAAACCTTATGCACGCATTGTGGCACAAGTTCAAAATCCACCCCAATGATGCGGCGAGGGCCATCTGGTCCTAGGTCACTTTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGGTACTTTGAGGGACCTTTCCAAGAAGAATCAGGAACATTCTCTTGCACCAACCGAGCAGGTTGAAGGTAATGATTCAAATTGTCAAACTGGCATCCCTGCACATAACAATCATGTGCCTTTCTCTGATAATGATAAACCAGCGTAG 873 0.4616 MYGHISSMNVTNRISTGEDDEGVGIGAESIDNHHIHYETQALEDGSGGVGGVVEDVNSDTVYVSGSGSEMSLQHDDSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCEIPSSSQCEDITTQNQRGAVEYPGRCSQPQRAASLSRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSCGTVQESGQDDSQSETLCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKKNQEHSLAPTEQVEGNDSNCQTGIPAHNNHVPFSDNDKPA 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0813 290 ProSiteProfiles GATA-type zinc finger domain profile. 202 261 IPR000679 GO:0006355|GO:0043565
Dere04g0813 290 Gene3D - 197 258 IPR013088 GO:0006355|GO:0008270
Dere04g0813 290 MobiDBLite consensus disorder prediction 255 279 - -
Dere04g0813 290 MobiDBLite consensus disorder prediction 251 290 - -
Dere04g0813 290 MobiDBLite consensus disorder prediction 1 20 - -
Dere04g0813 290 MobiDBLite consensus disorder prediction 176 206 - -
Dere04g0813 290 ProSitePatterns GATA-type zinc finger domain. 208 235 IPR000679 GO:0006355|GO:0043565
Dere04g0813 290 Pfam GATA zinc finger 208 244 IPR000679 GO:0006355|GO:0043565
Dere04g0813 290 SMART GATA_3 202 255 IPR000679 GO:0006355|GO:0043565
Dere04g0813 290 Pfam CCT motif 140 182 IPR010402 GO:0005515
Dere04g0813 290 ProSiteProfiles Tify domain profile. 73 108 IPR010399 -
Dere04g0813 290 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 204 255 - -
Dere04g0813 290 PANTHER GATA TRANSCRIPTION FACTOR 28 25 269 IPR045280 GO:0006355
Dere04g0813 290 ProSiteProfiles CCT domain profile. 140 182 IPR010402 GO:0005515
Dere04g0813 290 SMART tify_2 73 108 IPR010399 -
Dere04g0813 290 Pfam tify domain 77 107 IPR010399 -
Dere04g0813 290 MobiDBLite consensus disorder prediction 1 16 - -
Dere04g0813 290 MobiDBLite consensus disorder prediction 181 206 - -
Dere04g0813 290 CDD ZnF_GATA 208 253 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0813 Dere-ChrDere04 8371310 8377165 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0813 1 263 Tify Gene Family AT4G24470 54.074 1.51e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere04g0813 CCT 3.6e-15 CL0281